RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 CCNFP41002 786 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MAGEA4P43358 317 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PREPP48147 710 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RXRGP48443 463 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NOVA1P51513 510 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CTBP2P56545 445 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NAA20P61599 178 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 WDR5P61964 334 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RPS21P63220 83 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 E2F1Q01094 437 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC7A5Q01650 507 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 POU5F1Q01860 360 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 FOXC1Q12948 553 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ZBTB17Q13105 803 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC44A4Q53GD3 710 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PRRT3Q5FWE3 981 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ARSIQ5FYB1 569 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TCHHL1Q5QJ38 904 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 C9orf64Q5T6V5 341 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ABHD17BQ5VST6 288 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NIPAL1Q6NVV3 410 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 BRAT1Q6PJG6 821 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TMEM220Q6QAJ8 160 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 GDPD4Q6W3E5 623 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RTL10Q7L3V2 364 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC29A4Q7RTT9 530 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KCNMB4Q86W47 210 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PLXDC1Q8IUK5 500 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PSTKQ8IV42 348 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MCOLN2Q8IZK6 566 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 FSTL5Q8N475 847 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TC2NQ8N9U0 490 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ATP6V1C2Q8NEY4 427 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TTLQ8NG68 377 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 OR6C4Q8NGE1 309 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ACTL9Q8TC94 416 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NEK7Q8TDX7 302 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ADAMTS15Q8TE58 950 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DQX1Q8TE96 717 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KLHL29Q96CT2 875 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 WDR92Q96MX6 357 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TMEM74Q96NL1 305 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ASB2Q96Q27 587 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PPP1R10Q96QC0 940 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 HNRNPABQ99729 332 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MRPL45Q9BRJ2 306 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 THTPAQ9BU02 230 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CEP41Q9BYV8 373 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RACGAP1Q9H0H5 632 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DHX33Q9H6R0 707 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 HHATLQ9HCP6 504 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NECTIN3Q9NQS3 549 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KBTBD4Q9NVX7 518 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 APOBEC3BQ9UH17 382 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ANGPTL2Q9UKU9 493 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NENFQ9UMX5 172 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SOX13Q9UN79 622 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PSMD13Q9UNM6 376 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC12A4Q9UP95 1085 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KCNU1A8MYU2 1149 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TP53I11O14683 189 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 GYG2O15488 501 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 BUD23O43709 281 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 B3GALT2O43825 422 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DFNA5O60443 496 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 HEXBP07686 556 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PKMP14618 531 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PAICSP22234 425 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PIK3R1P27986 724 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 EEF1DP29692 281 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MC4RP32245 332 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 S100A3P33764 101 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RPL4P36578 427 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 HCAR3P49019 387 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RAB28P51157 221 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SH3BGRP55822 239 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ACTR3P61158 418 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PLIN5Q00G26 463 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DSC1Q08554 894 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 LAPTM5Q13571 262 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CUL3Q13618 768 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RCAN2Q14206 197 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 GPAT3Q53EU6 434 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TRIM61Q5EBN2 209 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PPP1R26Q5T8A7 1209 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 INTS11Q5TA45 600 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SCARA3Q6AZY7 606 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 FAM171BQ6P995 826 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 LINGO4Q6UY18 593 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 USP49Q70CQ1 688 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KRT77Q7Z794 578 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 LRRTM4Q86VH4 590 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC47A2Q86VL8 602 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RALGPS2Q86X27 583 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC13A5Q86YT5 568 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CLEC4FQ8N1N0 589 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TCAIMQ8N3R3 496 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CAMKVQ8NCB2 501 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DTX3LQ8TDB6 740 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PCED1BQ96HM7 432 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms