RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 C4orf33Q8N1A6 199 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 CBARPQ8N350 705 aaPredicted RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.99□□□□□ -1.13
VPS39-213ENST00000570062 TTC16Q8NEE8 873 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 TTC8Q8TAM2 541 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 MDM1Q8TC05 714 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 FAM45AQ8TCE6 357 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 DTX3LQ8TDB6 740 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 BLOC1S5Q8TDH9 187 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 FGF13Q92913 245 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 ELSPBP1Q96BH3 223 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 CCDC126Q96EE4 140 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 MYO19Q96H55 970 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 ZNF419Q96HQ0 510 aaPredicted RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 CDKN2AIPNLQ96HQ2 116 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 LYSMD1Q96S90 227 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 PAIP2Q9BPZ3 127 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 SIKE1Q9BRV8 207 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 PITPNM3Q9BZ71 974 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 CCDC68Q9H2F9 335 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 SUV39H2Q9H5I1 410 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 SYTL2Q9HCH5 934 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 SMYD2Q9NRG4 433 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 PIH1D1Q9NWS0 290 aaKnown RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 DEC1Q9P2X7 70 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 HECAQ9UBI9 543 aaPredicted RBP7.99□□□□□ -1.13
VPS39-213ENST00000570062 LHX3Q9UBR4 397 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 CCL26Q9Y258 94 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 CHKBQ9Y259 395 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 ACOT9Q9Y305 439 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 STARD13Q9Y3M8 1113 aa7.99□□□□□ -1.13
VPS39-213ENST00000570062 HEPACAM2A8MVW5 462 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 H3BMM5 538 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 CD3EAPO15446 510 aaKnown RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 SPAG7O75391 227 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ECI2O75521 394 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 TGDSO95455 350 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 PRAMEF12O95522 483 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 AHSGP02765 367 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 PYGLP06737 847 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 DHRS4L1P0CG22 281 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 TROVE2P10155 538 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS39-213ENST00000570062 CYP2A6P11509 494 aaPredicted RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 SRCP12931 536 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ZNF30P17039 623 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 GLDCP23378 1020 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 CD70P32970 193 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 CHRNA4P43681 627 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 HK2P52789 917 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ADARP55265 1226 aaKnown RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 RAB10P61026 200 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 NTHL1P78549 312 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 FCHO2Q0JRZ9 810 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ITIH4Q14624 930 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 EFTUD2Q15029 972 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS39-213ENST00000570062 DLG2Q15700 870 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 CRY1Q16526 586 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ZSCAN26Q16670 478 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 QPCTQ16769 361 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 FAM83EQ2M2I3 478 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 EML3Q32P44 896 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 GPR33Q49SQ1 333 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ACCSLQ4AC99 568 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 FAM78AQ5JUQ0 283 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 RARS2Q5T160 578 aaKnown RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 AGAP9Q5VTM2 703 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 MBLAC2Q68D91 279 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ZNF470Q6ECI4 717 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 GRAMD4Q6IC98 578 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 C22orf39Q6P5X5 142 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 CES3Q6UWW8 571 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 LINGO4Q6UY18 593 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 RAPH1Q70E73 1250 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 DSG4Q86SJ6 1040 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 TBC1D1Q86TI0 1168 aaPredicted RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 CACNA2D3Q8IZS8 1091 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 LINC00528Q8N1L1 170 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 RYBPQ8N488 228 aaPredicted RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 DCLK2Q8N568 766 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 OTUD6BQ8N6M0 293 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 GBP7Q8N8V2 638 aaPredicted RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 ARMC2Q8NEN0 867 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 LPCAT1Q8NF37 534 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 OR13J1Q8NGT2 312 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ITFG1Q8TB96 612 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ZNF398Q8TD17 642 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ZNF473Q8WTR7 871 aaKnown RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 HDAC10Q969S8 669 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 NXPE3Q969Y0 559 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 SCRN2Q96FV2 425 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 SERAC1Q96JX3 654 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ZSWIM3Q96MP5 696 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 ZNF317Q96PQ6 595 aaPredicted RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 HEPHQ9BQS7 1158 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 MCMBPQ9BTE3 642 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 GPR63Q9BZJ6 419 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 SLC13A1Q9BZW2 595 aa7.98□□□□□ -1.13
VPS39-213ENST00000570062 SMG9Q9H0W8 520 aaKnown RBP7.98□□□□□ -1.13
VPS39-213ENST00000570062 MANSC1Q9H8J5 431 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms