RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 BTBD6Q96KE9 485 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 FOXP3Q9BZS1 431 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 DPEP2Q9H4A9 486 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 PCDH18Q9HCL0 1135 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 IP6K2Q9UHH9 426 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 MOSPD1Q9UJG1 213 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 PHTF1Q9UMS5 762 aa16.1■□□□□ 0.17
CLN3-229ENST00000567963 UNC13CQ8NB66 2214 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 GCN1Q92616 2671 aaKnown RBP16.09■□□□□ 0.17
CLN3-229ENST00000567963 HEXIM1O94992 359 aaKnown RBP16.09■□□□□ 0.17
CLN3-229ENST00000567963 CPP00450 1065 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 MYCLP1P12525 358 aaPredicted RBP16.09■□□□□ 0.17
CLN3-229ENST00000567963 IL4RP24394 825 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 NFKBIAP25963 317 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 VIPR1P32241 457 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 SERPINB6P35237 376 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 PBX1P40424 430 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 MMP13P45452 471 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 INHBCP55103 352 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 CDH6P55285 790 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 RHDQ02161 417 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 VAC14Q08AM6 782 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 TRAF2Q12933 501 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 HLTFQ14527 1009 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLN3-229ENST00000567963 CERCAMQ5T4B2 595 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 DENND2CQ68D51 928 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 RAB11FIP2Q7L804 512 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 CCNJLQ8IV13 435 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 FBXO39Q8N4B4 442 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 ATPAF2Q8N5M1 289 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 Q8N9G6 341 aaPredicted RBP16.09■□□□□ 0.17
CLN3-229ENST00000567963 NSMCE1Q8WV22 266 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 SCRN2Q96FV2 425 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 TMEM74Q96NL1 305 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 NUP85Q9BW27 656 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 TEX101Q9BY14 249 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 STRADBQ9C0K7 418 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 EPB41L5Q9HCM4 733 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 LRIT1Q9P2V4 623 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 ANAPC7Q9UJX3 599 aa16.09■□□□□ 0.17
CLN3-229ENST00000567963 NUDT21O43809 227 aaKnown RBP16.08■□□□□ 0.16
CLN3-229ENST00000567963 FUCA1P04066 466 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 SERPING1P05155 500 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 CYP1A2P05177 515 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 CYP2A6P11509 494 aaPredicted RBP16.08■□□□□ 0.16
CLN3-229ENST00000567963 LHCGRP22888 699 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 CCKBRP32239 447 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 UGT1A5P35504 534 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 ETV3P41162 512 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 FANCCQ00597 558 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 TSR1Q2NL82 804 aaKnown RBP16.08■□□□□ 0.16
CLN3-229ENST00000567963 C14orf28Q4W4Y0 310 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 SPECC1LQ69YQ0 1117 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 HSD11B1LQ7Z5J1 315 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 LRRC49Q8IUZ0 686 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 GPBAR1Q8TDU6 330 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 DTD2Q96FN9 168 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 PHPT1Q9NRX4 125 aaPredicted RBP16.08■□□□□ 0.16
CLN3-229ENST00000567963 PPIL1Q9Y3C6 166 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 RNF215Q9Y6U7 377 aa16.08■□□□□ 0.16
CLN3-229ENST00000567963 ARHGEF17Q96PE2 2063 aaPredicted RBP16.08■□□□□ 0.16
CLN3-229ENST00000567963 A0A087X0T9 212 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 NPIPB15A6NHN6 443 aaPredicted RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 B4DGG1 531 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 MYO1FO00160 1098 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 PSMD11O00231 422 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 PGLSO95336 258 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 CEACAM5P06731 702 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 FAM228BP0C875 321 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 UBASH3AP57075 661 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 ZBED6P86452 979 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 ZFP36L1Q07352 338 aaKnown RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 MMRN1Q13201 1228 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 PTPRRQ15256 657 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 TAF1BQ53T94 588 aaPredicted RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 ARMC12Q5T9G4 340 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 SPRED1Q7Z699 444 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 LUZP1Q86V48 1076 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 HEATR4Q86WZ0 1026 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 ZNF843Q8N446 348 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 TEX26Q8N6G2 289 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 FAM71BQ8TC56 605 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 CPLX3Q8WVH0 158 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 WBP1Q96G27 269 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 MCCC1Q96RQ3 725 aaPredicted RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 CARS2Q9HA77 564 aaKnown RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 CBX8Q9HC52 389 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 SPATS2LQ9NUQ6 558 aaKnown RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 RCOR3Q9P2K3 495 aaPredicted RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 ATXN7L1Q9ULK2 861 aaPredicted RBP16.07■□□□□ 0.16
CLN3-229ENST00000567963 CAPN11Q9UMQ6 739 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 PCDHGA7Q9Y5G6 932 aa16.07■□□□□ 0.16
CLN3-229ENST00000567963 K7ENP7 123 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 CD48P09326 243 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 CCNB1P14635 433 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 SLC5A2P31639 672 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 TPM4P67936 248 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 CDK3Q00526 305 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 CLN3Q13286 438 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 ARHGEF7Q14155 803 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms