RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GEMP55040 296 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 MPP3Q13368 585 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 STAT4Q14765 748 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 PARP6Q2NL67 630 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 AASDHQ4L235 1098 aaPredicted RBP19.57■□□□□ 0.72
CLN3-225ENST00000566824 NYAP1Q6ZVC0 841 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 Q6ZVL8 140 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 LYSMD3Q7Z3D4 306 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 RABEPKQ7Z6M1 372 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 ABI3BPQ7Z7G0 1075 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 CREG2Q8IUH2 290 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 SLC22A18ASQ8N1D0 253 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 MFSD2AQ8NA29 543 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 LYSMD1Q96S90 227 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 ADGRE3Q9BY15 652 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 SHOC2Q9UQ13 582 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 K7ESM1 405 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 TLR4O00206 839 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 ANXA9O76027 345 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 TCP1P17987 556 aaKnown RBP19.56■□□□□ 0.72
CLN3-225ENST00000566824 CTSKP43235 329 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 STC1P52823 247 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 NXPH1P58417 271 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 ETF1P62495 437 aaKnown RBP19.56■□□□□ 0.72
CLN3-225ENST00000566824 AGERQ15109 404 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 SLC1A5Q15758 541 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 P3H1Q32P28 736 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 KCTD11Q693B1 232 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 DENND5AQ6IQ26 1287 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 SYT10Q6XYQ8 523 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 Q6ZSR6 202 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 TECPR1Q7Z6L1 1165 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 ZSCAN30Q86W11 494 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 EDEM2Q9BV94 578 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 CD84Q9UIB8 345 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 HS3ST3A1Q9Y663 406 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 SPTBN4Q9H254 2564 aa19.56■□□□□ 0.72
CLN3-225ENST00000566824 C1orf232A0A0U1RR37 186 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 PCCBP05166 539 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 THEGLP0DJG4 465 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 ARHGEF7Q14155 803 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 LRRC14Q15048 493 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 TEAD4Q15561 434 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 CYP1B1Q16678 543 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 HLA-BQ31612 363 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 RANBP10Q6VN20 620 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 NDUFAF2Q8N183 169 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 MAGOHBQ96A72 148 aaKnown RBP19.55■□□□□ 0.72
CLN3-225ENST00000566824 DTD2Q96FN9 168 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 KLHDC7BQ96G42 594 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 ETNK1Q9HBU6 452 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 ZNF711Q9Y462 761 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 SAR1BQ9Y6B6 198 aa19.55■□□□□ 0.72
CLN3-225ENST00000566824 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 FPGTO14772 594 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 ZNF189O75820 626 aaPredicted RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 EPOP01588 193 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 COILP38432 576 aaPredicted RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 C21orf59P57076 290 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 PFN3P60673 137 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 PRPSAP1Q14558 356 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 INPP5AQ14642 412 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 TRIP13Q15645 432 aaPredicted RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 KYAT3Q6YP21 454 aaKnown RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 PTAR1Q7Z6K3 402 aaPredicted RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 MINDY1Q8N5J2 469 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 GPR161Q8N6U8 529 aaKnown RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 PDCD7Q8N8D1 485 aaKnown RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 DENND6BQ8NEG7 585 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 SCAMP4Q969E2 229 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 NUS1Q96E22 293 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 ABCG8Q9H221 673 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 GPR27Q9NS67 375 aa19.54■□□□□ 0.72
CLN3-225ENST00000566824 PIH1D1Q9NWS0 290 aaKnown RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 PNMA8BQ9ULN7 279 aaPredicted RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 FNDC3AQ9Y2H6 1198 aaKnown RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 AAR2Q9Y312 384 aaKnown RBP19.54■□□□□ 0.72
CLN3-225ENST00000566824 LRP4O75096 1905 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 A6NNZ2 444 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 C4orf47A7E2U8 309 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 PSMD11O00231 422 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 SLC4A1P02730 911 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 MSLNQ13421 630 aaPredicted RBP19.53■□□□□ 0.72
CLN3-225ENST00000566824 SHBQ15464 509 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 HS1BP3Q53T59 392 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 KCTD16Q68DU8 428 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 GSTA5Q7RTV2 222 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 IQCHQ86VS3 1027 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 TTC30BQ8N4P2 665 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 CCDC89Q8N998 374 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 C16orf45Q96MC5 204 aaPredicted RBP19.53■□□□□ 0.72
CLN3-225ENST00000566824 AGAP2Q99490 1192 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 TBL1YQ9BQ87 522 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 FSD1LQ9BXM9 530 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 GAREM1Q9H706 876 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 MAGEE1Q9HCI5 957 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 HOMER3Q9NSC5 361 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 OR1A2Q9Y585 309 aa19.53■□□□□ 0.72
CLN3-225ENST00000566824 BUD23O43709 281 aaKnown RBP19.52■□□□□ 0.72
CLN3-225ENST00000566824 PHF2O75151 1096 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms