RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TRAF1Q13077 416 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 COLEC12Q5KU26 742 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 OTUD1Q5VV17 481 aaPredicted RBP4.79□□□□□ -1.64
LINC00560-201ENST00000564593 JADE1Q6IE81 842 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 NRACQ8N912 160 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 AGBL3Q8NEM8 1001 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 OR14L1PQ8NHC6 308 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 TRIB2Q92519 343 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 HARBI1Q96MB7 349 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 CENPOQ9BU64 300 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 MXD3Q9BW11 206 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 IFIH1Q9BYX4 1025 aaKnown RBP4.79□□□□□ -1.64
LINC00560-201ENST00000564593 SLC28A3Q9HAS3 691 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 CLK4Q9HAZ1 481 aaKnown RBP4.79□□□□□ -1.64
LINC00560-201ENST00000564593 NRBP1Q9UHY1 535 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 RPS6KA6Q9UK32 745 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 TTLL3Q9Y4R7 772 aa4.79□□□□□ -1.64
LINC00560-201ENST00000564593 DNAJC9-AS1A6NH13 148 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 SOCS2O14508 198 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 NAGAP17050 411 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 GABRB1P18505 474 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 GPTP24298 496 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 ADIPOQQ15848 244 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 MMEL1Q495T6 779 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 RAB41Q5JT25 222 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 MFSD4BQ5TF39 518 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 KIAA0930Q6ICG6 404 aaPredicted RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 MTSS1LQ765P7 747 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 JAKMIP2Q96AA8 810 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 URB1-AS1Q96HZ7 61 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 FEM1CQ96JP0 617 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 NDST4Q9H3R1 872 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 PLAC1Q9HBJ0 212 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 MKKSQ9NPJ1 570 aaPredicted RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 ANKEF1Q9NU02 776 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 OR6C3Q9NZP0 311 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 SUCLA2Q9P2R7 463 aaPredicted RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 FBXL17Q9UF56 701 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 POLG2Q9UHN1 485 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 RCOR1Q9UKL0 485 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 R3HDM2Q9Y2K5 976 aaKnown RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 SNX8Q9Y5X2 465 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 STON1Q9Y6Q2 735 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 VWA5AO00534 786 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 HS6ST1O60243 411 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 EIF5BO60841 1220 aaKnown RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 BEST1O76090 585 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 PSG1P11464 419 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 AKR1B1P15121 316 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 RFX5P48382 616 aaPredicted RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 CAMPP49913 170 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 TFAP4Q01664 338 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 IKQ13123 557 aaPredicted RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 ASTE1Q2TB18 679 aaPredicted RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 CDONQ4KMG0 1287 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 FSCBQ5H9T9 825 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 DNTTIP2Q5QJE6 756 aaKnown RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 LRCH2Q5VUJ6 765 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 PLEKHA7Q6IQ23 1121 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 ANKRD54Q6NXT1 300 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 SEPT14Q6ZU15 432 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 SHFQ7M4L6 423 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 GALNT5Q7Z7M9 940 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 OR8H2Q8N162 312 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 IGSF8Q969P0 613 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 VOPP1Q96AW1 172 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 ERP27Q96DN0 273 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 SAT2Q96F10 170 aaPredicted RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 RRNAD1Q96FB5 475 aaKnown RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 ELMOD3Q96FG2 381 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 HINT3Q9NQE9 182 aaKnown RBP4.78□□□□□ -1.64
LINC00560-201ENST00000564593 SETD4Q9NVD3 440 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 OGFRQ9NZT2 677 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 IL36RNQ9UBH0 155 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 NENFQ9UMX5 172 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 PAM16Q9Y3D7 125 aa4.78□□□□□ -1.64
LINC00560-201ENST00000564593 C1orf226A1L170 272 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 MOSPD3O75425 235 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 LCATP04180 440 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 CYC1P08574 325 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 MRPL12P52815 198 aaKnown RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 STK4Q13043 487 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 CTTNQ14247 550 aaKnown RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 HNF4GQ14541 408 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 CCDC142Q17RM4 750 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 FNBP1LQ5T0N5 605 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 C11orf87Q6NUJ2 197 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 METTL2BQ6P1Q9 378 aaKnown RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 PQLC2Q6ZP29 291 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 RNF168Q8IYW5 571 aaPredicted RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 SPATA6LQ8N4H0 392 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 SNRNP27Q8WVK2 155 aaKnown RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 METTL2AQ96IZ6 378 aaKnown RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 PPP1R13BQ96KQ4 1090 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 SEPT5Q99719 369 aaPredicted RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 SRSF8Q9BRL6 282 aaKnown RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 SLC29A3Q9BZD2 475 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 PLK3Q9H4B4 646 aa4.77□□□□□ -1.65
LINC00560-201ENST00000564593 ESRP2Q9H6T0 727 aaKnown RBP4.77□□□□□ -1.65
LINC00560-201ENST00000564593 PLSCR4Q9NRQ2 329 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms