RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 HS1BP3Q53T59 392 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 UTP14CQ5TAP6 766 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 C6orf163Q5TEZ5 329 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SHEQ5VZ18 495 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PM20D1Q6GTS8 502 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 NAPEPLDQ6IQ20 393 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TMEM81Q6P7N7 255 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CEP128Q6ZU80 1094 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 C1orf186Q6ZWK4 172 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SLC46A3Q7Z3Q1 461 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CACNA2D4Q7Z3S7 1137 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SPATA2LQ8IUW3 424 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ELMOD2Q8IZ81 293 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 GPC2Q8N158 579 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SLC17A8Q8NDX2 589 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 AGBL3Q8NEM8 1001 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 DBF4BQ8NFT6 615 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 OR52E1Q8NGJ3 308 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 WDR48Q8TAF3 677 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CLEC4CQ8WTT0 213 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CHURC1Q8WUH1 139 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 METTL21AQ8WXB1 218 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 NKD2Q969F2 451 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FAM149B1Q96BN6 582 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SPACA9Q96E40 222 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FBXL20Q96IG2 436 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 LRIG1Q96JA1 1093 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SLC46A1Q96NT5 459 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 MAP7D2Q96T17 732 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PARK7Q99497 189 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 NDC1Q9BTX1 674 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 KIFC3Q9BVG8 833 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PUS3Q9BZE2 481 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 GPR88Q9GZN0 384 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 GOLPH3LQ9H4A5 285 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 EPHX3Q9H6B9 360 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TCF7L2Q9NQB0 619 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 RNF181Q9P0P0 153 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PEMTQ9UBM1 199 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 HESX1Q9UBX0 185 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CDH7Q9ULB5 785 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 OSGIN2Q9Y236 505 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TNFSF13BQ9Y275 285 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 MRPS17Q9Y2R5 130 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 NAALAD2Q9Y3Q0 740 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TTC41PQ6P2S7 1318 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 C4AP0C0L4 1744 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TJP1Q07157 1748 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ADM5C9JUS6 153 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 KIF2AO00139 706 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 HIP1O00291 1037 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ALDH1A2O94788 518 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SIX3O95343 332 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 RNASE1P07998 156 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ENO2P09104 434 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FAM58BPP0C7Q3 252 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CYP2C9P11712 490 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 EPORP19235 508 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 AHCYP23526 432 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PAX7P23759 505 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 MGAT1P26572 445 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CHRNA3P32297 505 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 HNF1BP35680 557 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ADCY8P40145 1251 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CAMPP49913 170 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TOB1P50616 345 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 GABPB1Q06547 395 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CSTF3Q12996 717 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SGCBQ16585 318 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 STRIP1Q5VSL9 837 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 OTUD7BQ6GQQ9 843 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 JADE1Q6IE81 842 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 RRM2BQ7LG56 351 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PPP1R32Q7Z5V6 425 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FRMD5Q7Z6J6 570 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 IQCHQ86VS3 1027 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ABRAQ8N0Z2 381 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 DCLK2Q8N568 766 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 LPCAT1Q8NF37 534 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SUN3Q8TAQ9 357 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 IGDCC4Q8TDY8 1250 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 KAT2AQ92830 837 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ITFG2Q969R8 447 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 HDAC11Q96DB2 347 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 MMABQ96EY8 250 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ALG14Q96F25 216 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 HIST1H2AAQ96QV6 131 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 MRIQ9BWK5 157 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 MRPL1Q9BYD6 325 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 HRH4Q9H3N8 390 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TMEM206Q9H813 350 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 GBA2Q9HCG7 927 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ATP13A1Q9HD20 1204 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 MBNL3Q9NUK0 354 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SETD4Q9NVD3 440 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 THAP1Q9NVV9 213 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ZNHIT6Q9NWK9 470 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 HAO2Q9NYQ3 351 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 OGFRQ9NZT2 677 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms