RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C10orf142B7Z368 130 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 TOR1BO14657 336 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 BCAT2O15382 392 aaPredicted RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 SLC31A1O15431 190 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 LRP3O75074 770 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 USP12O75317 370 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 PPFIA2O75334 1257 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 RECQL5O94762 991 aaPredicted RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 PAK4O96013 591 aaPredicted RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 SLC4A1P02730 911 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 ITIH2P19823 946 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 LHCGRP22888 699 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 HMGCLP35914 325 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 MPLP40238 635 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 MAGEA6P43360 314 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 CHRNA4P43681 627 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 STC1P52823 247 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 SPARCL1Q14515 664 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 LRRC14Q15048 493 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 ZNF284Q2VY69 593 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 FAM182AQ5T1J6 154 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 ARMC3Q5W041 872 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 CRTC1Q6UUV9 634 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 KYAT3Q6YP21 454 aaKnown RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 ZNF765Q7L2R6 523 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 LYSMD3Q7Z3D4 306 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 PRUNE1Q86TP1 453 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 IQCHQ86VS3 1027 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 PPIL6Q8IXY8 311 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 NRSN1Q8IZ57 195 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 ABCA7Q8IZY2 2146 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 PPHLN1Q8NEY8 458 aaKnown RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 DTD2Q96FN9 168 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 LENG8Q96PV6 779 aaPredicted RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 FRMD8Q9BZ67 464 aaPredicted RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.08□□□□□ -0.85e-6■■■□□ 19.1
USP3-216ENST00000559873 NFKBIL1Q9UBC1 381 aaPredicted RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 PILRBQ9UKJ0 227 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 ZFR2Q9UPR6 939 aaKnown RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 SHOC2Q9UQ13 582 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 UTP11Q9Y3A2 253 aaKnown RBP10.08□□□□□ -0.8
USP3-216ENST00000559873 PKP3Q9Y446 797 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 OTOGLQ3ZCN5 2332 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 THADAQ6YHU6 1953 aa10.08□□□□□ -0.8
USP3-216ENST00000559873 TRPM6Q9BX84 2022 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 SDK1Q7Z5N4 2213 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 HEATR9A2RTY3 570 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 DNALI1O14645 258 aaPredicted RBP10.07□□□□□ -0.8
USP3-216ENST00000559873 STX7O15400 261 aaKnown RBP10.07□□□□□ -0.8
USP3-216ENST00000559873 TTI1O43156 1089 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 CLDN7O95471 211 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 CFIP05156 583 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 C1SP09871 688 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 TSHRP16473 764 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 HTR1BP28222 390 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 CD38P28907 300 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 ETV3P41162 512 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 PTGIRP43119 386 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 RABIFP47224 123 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 C21orf59P57076 290 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 DCDC1P59894 354 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 SEMG2Q02383 582 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 CALCOCO2Q13137 446 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 MTM1Q13496 603 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 SEPT6Q14141 434 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 KCNJ11Q14654 390 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 TAF1AQ15573 450 aaPredicted RBP10.07□□□□□ -0.8
USP3-216ENST00000559873 DUOXA1Q1HG43 343 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 ESRP1Q6NXG1 681 aaKnown RBP10.07□□□□□ -0.8
USP3-216ENST00000559873 NLRP9Q7RTR0 991 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 TSPAN33Q86UF1 283 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 HOOK3Q86VS8 718 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 DCP2Q8IU60 420 aaKnown RBP10.07□□□□□ -0.8
USP3-216ENST00000559873 GPR161Q8N6U8 529 aaKnown RBP10.07□□□□□ -0.8
USP3-216ENST00000559873 TMEM145Q8NBT3 493 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 BRSK1Q8TDC3 778 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 CPT1BQ92523 772 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 RUBCNQ92622 972 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 AP2M1Q96CW1 435 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 SNF8Q96H20 258 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 COQ10AQ96MF6 247 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 SLC6A18Q96N87 628 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 MYOCQ99972 504 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 C19orf43Q9BQ61 176 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 NUSAP1Q9BXS6 441 aaKnown RBP10.07□□□□□ -0.8
USP3-216ENST00000559873 IL22Q9GZX6 179 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 ARRDC1-AS1Q9H2J1 176 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 CASS4Q9NQ75 786 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 BFARQ9NZS9 450 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 NEU2Q9Y3R4 380 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 HS3ST3A1Q9Y663 406 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 GON4LQ3T8J9 2241 aa10.07□□□□□ -0.8
USP3-216ENST00000559873 EFCAB8A8MWE9 144 aa10.06□□□□□ -0.8
USP3-216ENST00000559873 CACNB4O00305 520 aaPredicted RBP10.06□□□□□ -0.8
USP3-216ENST00000559873 KHNYNO15037 678 aaKnown RBP10.06□□□□□ -0.8
USP3-216ENST00000559873 PCCBP05166 539 aa10.06□□□□□ -0.8
USP3-216ENST00000559873 SYPP08247 313 aa10.06□□□□□ -0.8
USP3-216ENST00000559873 PIRTP0C851 137 aa10.06□□□□□ -0.8
USP3-216ENST00000559873 MLNP12872 115 aa10.06□□□□□ -0.8
USP3-216ENST00000559873 LPOP22079 712 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms