RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 PARVAQ9NVD7 372 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 TAS2R14Q9NYV8 317 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 TNRC6AQ8NDV7 1962 aaKnown RBP13.11□□□□□ -0.31
TPM1-220ENST00000559556 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.11□□□□□ -0.31
TPM1-220ENST00000559556 A0A1W2PQC6 194 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 DFFAO00273 331 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 PDE2AO00408 941 aaPredicted RBP13.11□□□□□ -0.31
TPM1-220ENST00000559556 HTRA2O43464 458 aaPredicted RBP13.11□□□□□ -0.31
TPM1-220ENST00000559556 CPNE6O95741 557 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 CCNB1P14635 433 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 CD82P27701 267 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 HCAR3P49019 387 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 SCNN1BP51168 640 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 RENBPP51606 427 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 ZNF135P52742 658 aaPredicted RBP13.11□□□□□ -0.31
TPM1-220ENST00000559556 B4GALNT1Q00973 533 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 DPYSQ14117 519 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 ACOX1Q15067 660 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 CNGA3Q16281 694 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 MAP9Q49MG5 647 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 TMCO4Q5TGY1 634 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 FNIP1Q8TF40 1166 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 NUS1Q96E22 293 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 ZNF599Q96NL3 588 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 HSD3B7Q9H2F3 369 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 SEMA6CQ9H3T2 930 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 KCTD5Q9NXV2 234 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 FOXJ2Q9P0K8 574 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 SEPT10Q9P0V9 454 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 B4GALT6Q9UBX8 382 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 SEPT3Q9UH03 358 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 PCSK1NQ9UHG2 260 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 MYO6Q9UM54 1294 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 PCDHGA4Q9Y5G9 962 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 ICE1Q9Y2F5 2266 aa13.11□□□□□ -0.31
TPM1-220ENST00000559556 CCDC88CQ9P219 2028 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 A0A1W2PQ67 120 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 TMEM191CA6NGB0 347 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 C9orf172C9J069 976 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 PYCARD-AS1I3L0S3 204 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 DAPK3O43293 454 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 PRPSAP2O60256 369 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 RNF8O76064 485 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 ATP1A3P13637 1013 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 KRT10P13645 584 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 CR2P20023 1033 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 MIPP30301 263 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 SLC10A7Q0GE19 358 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 LBRQ14739 615 aaKnown RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 C16orf72Q14CZ0 275 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 CLPPQ16740 277 aaPredicted RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 PPP6R3Q5H9R7 873 aaPredicted RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 MANEAQ5SRI9 462 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 PHF19Q5T6S3 580 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 PRICKLE2Q7Z3G6 844 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 HEATR4Q86WZ0 1026 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 NRROSQ86YC3 692 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 LZTR1Q8N653 840 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 PAF1Q8N7H5 531 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 EXTL1Q92935 676 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 DTD2Q96FN9 168 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 TEX101Q9BY14 249 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 GSDMCQ9BYG8 508 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 FRMD8Q9BZ67 464 aaPredicted RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 TRIM7Q9C029 511 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 CARS2Q9HA77 564 aaKnown RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 PHPT1Q9NRX4 125 aaPredicted RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 STARD5Q9NSY2 213 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 SPATS2LQ9NUQ6 558 aaKnown RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 WDR70Q9NW82 654 aa13.1□□□□□ -0.31
TPM1-220ENST00000559556 TRNAU1APQ9NX07 287 aaKnown RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 CWC15Q9P013 229 aaKnown RBP13.1□□□□□ -0.31
TPM1-220ENST00000559556 HIVEP3Q5T1R4 2406 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 A8MX80 341 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 PSMD11O00231 422 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 HGSO14964 777 aaPredicted RBP13.09□□□□□ -0.31
TPM1-220ENST00000559556 TEX33O43247 280 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 B4GAT1O43505 415 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 LRCH4O75427 683 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 HEXIM1O94992 359 aaKnown RBP13.09□□□□□ -0.31
TPM1-220ENST00000559556 WISP1O95388 367 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 PEX11BO96011 259 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 CPP00450 1065 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 FUCA1P04066 466 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 CEACAM5P06731 702 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 TNFAIP3P21580 790 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 TEAD1P28347 426 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 VIPR1P32241 457 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 HSPA9P38646 679 aaKnown RBP13.09□□□□□ -0.31
TPM1-220ENST00000559556 MAPK10P53779 464 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 MAZP56270 477 aaKnown RBP13.09□□□□□ -0.31
TPM1-220ENST00000559556 KCNC4Q03721 635 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 ILF3Q12906 894 aaKnown RBP eCLIP13.09□□□□□ -0.31
TPM1-220ENST00000559556 NFATC3Q12968 1075 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 ZNF235Q14590 738 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 NCAPHQ15003 741 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 STX1AQ16623 288 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 VASH2Q86V25 355 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 PIM3Q86V86 326 aa13.09□□□□□ -0.31
TPM1-220ENST00000559556 ZFAND4Q86XD8 727 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms