RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	DRG2	P55039	364 aa	Known RBP	4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	TBL3	Q12788	808 aa	Known RBP	4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	VEPH1	Q14D04	833 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	ANKRD1	Q15327	319 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	GPATCH4	Q5T3I0	446 aa	Known RBP	4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	ANKRD45	Q5TZF3	282 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	LCTL	Q6UWM7	567 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	CEACAM20	Q6UY09	585 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	MTSS1L	Q765P7	747 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	GPAT4	Q86UL3	456 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	NOXA1	Q86UR1	476 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	FOXRED2	Q8IWF2	684 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	DUSP19	Q8WTR2	217 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	TRAPPC12	Q8WVT3	735 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	RASSF1	Q9NS23	344 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	CTNNAL1	Q9UBT7	734 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	SMAD5-AS1	Q9Y6J3	95 aa		4.38	□□□□□ -1.71
VPS13C-208	ENST00000559119	MMP2	P08253	660 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	PAX1	P15863	534 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	RAD23B	P54727	409 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	POSTN	Q15063	836 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	KRT24	Q2M2I5	525 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	CCNYL2	Q5T2Q4	361 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	STXBP5	Q5T5C0	1151 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	SERTAD4-AS1	Q5TG53	156 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	ARHGAP17	Q68EM7	881 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	SLC35E4	Q6ICL7	350 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	ANKRD54	Q6NXT1	300 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	CCDC174	Q6PII3	467 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	MOGAT3	Q86VF5	341 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	ZNF34	Q8IZ26	560 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	C1orf87	Q8N0U7	546 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	VPS37A	Q8NEZ2	397 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	BEST2	Q8NFU1	509 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	ESRP2	Q9H6T0	727 aa	Known RBP	4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	MKKS	Q9NPJ1	570 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	DDX4	Q9NQI0	724 aa	Known RBP	4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	HCFC1R1	Q9NWW0	138 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	IL1RAPL1	Q9NZN1	696 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	PEMT	Q9UBM1	199 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	FEM1B	Q9UK73	627 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	KCNK7	Q9Y2U2	307 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	STON1	Q9Y6Q2	735 aa		4.37	□□□□□ -1.71
VPS13C-208	ENST00000559119	BCAT2	O15382	392 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	KLK10	O43240	276 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	MYOD1	P15172	320 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	KRTAP5-9	P26371	169 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	PDE1B	Q01064	536 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	TAF11	Q15544	211 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	KCTD18	Q6PI47	426 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	ZNF497	Q6ZNH5	498 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	HERC6	Q8IVU3	1022 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	FTSJ3	Q8IY81	847 aa	Known RBP	4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	ZCCHC9	Q8N567	271 aa	Known RBP	4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	USP38	Q8NB14	1042 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	ADAD2	Q8NCV1	583 aa	Known RBP	4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	KLHDC9	Q8NEP7	349 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	STAM	Q92783	540 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	RILPL2	Q969X0	211 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	ZNF524	Q96C55	264 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	C17orf77	Q96MU5	243 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	SYT17	Q9BSW7	474 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	SNTG1	Q9NSN8	517 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	DAAM1	Q9Y4D1	1078 aa		4.36	□□□□□ -1.71
VPS13C-208	ENST00000559119	VWA3A	A6NCI4	1184 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119		B9A039	149 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	PCDH7	O60245	1069 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	ZNF500	O60304	480 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	WDR1	O75083	606 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	INHBA	P08476	426 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	DDX5	P17844	614 aa	Known RBP	4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	EDN2	P20800	178 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	AGA	P20933	346 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	DDIT3	P35638	169 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	HNRNPH2	P55795	449 aa	Known RBP	4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	EEF1A1	P68104	462 aa	Known RBP	4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	EIF2S3L	Q2VIR3	472 aa	Known RBP	4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	SIRPB2	Q5JXA9	342 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	EEF1A1P5	Q5VTE0	462 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	ADGRG6	Q86SQ4	1221 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	BBS4	Q96RK4	519 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	POLR3C	Q9BUI4	534 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	TAOK3	Q9H2K8	898 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	TMEM160	Q9NX00	188 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	KIAA1456	Q9P272	454 aa		4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
VPS13C-208	ENST00000559119	TP53BP1	Q12888	1972 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	BLOC1S5-TXNDC5	H3BN57	136 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	CYC1	P08574	325 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	POU1F1	P28069	291 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	GRIK3	Q13003	919 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	GTF2H2	Q13888	395 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	TCTN1	Q2MV58	587 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	ZC2HC1B	Q5TFG8	222 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	GTF2H2C	Q6P1K8	395 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	SLC27A1	Q6PCB7	646 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	LINGO2	Q7L985	606 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	TADA2B	Q86TJ2	420 aa		4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	SRBD1	Q8N5C6	995 aa	Known RBP	4.34	□□□□□ -1.71
VPS13C-208	ENST00000559119	SPPL3	Q8TCT6	385 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms