RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 LZTR1Q8N653 840 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 C19orf60Q96EN9 201 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 SLC10A4Q96EP9 437 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 MS4A4AQ96JQ5 239 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 MCMBPQ9BTE3 642 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 SLC39A8Q9C0K1 460 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 PLK2Q9NYY3 685 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 WARS2Q9UGM6 360 aaKnown RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 FAM50BQ9Y247 325 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 DNAJC15Q9Y5T4 150 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 ST14Q9Y5Y6 855 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 TCRBV3S1A0A5B6 114 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 ANGPT2O15123 496 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 ARPC2O15144 300 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 HGFP14210 728 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 TIGD2Q4W5G0 525 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 TWF2Q6IBS0 349 aaKnown RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 DNAJC14Q6Y2X3 702 aaPredicted RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 SLC15A4Q8N697 577 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 PTGR2Q8N8N7 351 aaPredicted RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 PSD4Q8NDX1 1056 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 PPHLN1Q8NEY8 458 aaKnown RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 HSFY1Q96LI6 401 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 RNF145Q96MT1 663 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 CDK15Q96Q40 435 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 MRPL57Q9BQC6 102 aaKnown RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 NPLQ9BXD5 320 aaPredicted RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 ANKRD60Q9BZ19 345 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 FANCEQ9HB96 536 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 NT5MQ9NPB1 228 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 CD300AQ9UGN4 299 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 SLC27A5Q9Y2P5 690 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 ACTL7AQ9Y615 435 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 OCM2P0CE71 109 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 OCMP0CE72 109 aaPredicted RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 MAP4P27816 1152 aaKnown RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 BMXP51813 675 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 DAOAP59103 153 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 SQLEQ14534 574 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 TGFBIQ15582 683 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 TECRLQ5HYJ1 363 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 PCID2Q5JVF3 399 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 SAMD4BQ5PRF9 694 aaKnown RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 CIR1Q86X95 450 aaPredicted RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 CRYBG2Q8N1P7 616 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 BBS5Q8N3I7 341 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 C3orf58Q8NDZ4 430 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 TMEM209Q96SK2 561 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 EFHD1Q9BUP0 239 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 KIFC1Q9BW19 673 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 GSTO2Q9H4Y5 243 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 INTS7Q9NVH2 962 aaKnown RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 FBXW11Q9UKB1 542 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 UTS2RQ9UKP6 389 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 ZBBXA8MT70 800 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 ENPP3O14638 875 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 RSL1D1O76021 490 aaKnown RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 CD86P42081 329 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 ACADSBP45954 432 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 NPY2RP49146 381 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 C21orf59P57076 290 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 IHHQ14623 411 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 PRR23BQ6ZRT6 265 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 ERMP1Q7Z2K6 904 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 UNC93AQ86WB7 457 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 ABI1Q8IZP0 508 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 GPR152Q8TDT2 470 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 MAELQ96JY0 434 aaKnown RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 TNIP3Q96KP6 325 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 FAM210AQ96ND0 272 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 MUS81Q96NY9 551 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 TMEM181Q9P2C4 612 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 MID2Q9UJV3 735 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 PLXNB2O15031 1838 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 SH3PXD2BA1X283 911 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 GOLGA8CPA6NN73 597 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 NOBOXO60393 691 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 APOA4P06727 396 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 SH3BGRP55822 239 aaPredicted RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 LAPTM4AQ15012 233 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 PTPRRQ15256 657 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 ZBTB6Q15916 424 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 USP41Q3LFD5 358 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 PAGE3Q5JUK9 113 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 HECTD2Q5U5R9 776 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 SAPCD2Q86UD0 394 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 ITIH5Q86UX2 942 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 SLC25A23Q9BV35 468 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 SACM1LQ9NTJ5 587 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 VPS28Q9UK41 221 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 UBQLN1Q9UMX0 589 aaKnown RBP12.34□□□□□ -0.43
LDLR-205ENST00000557933 SLC8A2Q9UPR5 921 aa12.34□□□□□ -0.43
LDLR-205ENST00000557933 A0A087WXM4 84 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 UBA6A0AVT1 1052 aaPredicted RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 PTGES3LE9PB15 166 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 FXYD1O00168 92 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 PIRO00625 290 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 H2AFYO75367 372 aaKnown RBP12.33□□□□□ -0.44
LDLR-205ENST00000557933 CTSHP09668 335 aa12.33□□□□□ -0.44
LDLR-205ENST00000557933 GFAPP14136 432 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms