RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CHCHD3Q9NX63 227 aaKnown RBP3.21□□□□□ -1.9
TRAV28-201ENST00000557548 CWC25Q9NXE8 425 aaPredicted RBP3.21□□□□□ -1.9
TRAV28-201ENST00000557548 CWC15Q9P013 229 aaKnown RBP3.21□□□□□ -1.9
TRAV28-201ENST00000557548 DNAJB9Q9UBS3 223 aa3.21□□□□□ -1.9
TRAV28-201ENST00000557548 TUBE1Q9UJT0 475 aa3.21□□□□□ -1.9
TRAV28-201ENST00000557548 OSGIN1Q9UJX0 560 aa3.21□□□□□ -1.9
TRAV28-201ENST00000557548 EXO1Q9UQ84 846 aaKnown RBP3.21□□□□□ -1.9
TRAV28-201ENST00000557548 EPN1Q9Y6I3 576 aaPredicted RBP3.21□□□□□ -1.9
TRAV28-201ENST00000557548 ZNF644Q9H582 1327 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 TRBV5-7A0A0A0MS05 114 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 A0A0U1RQK1 487 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ARHGEF37A1IGU5 675 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ZNF320A2RRD8 509 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 DPPA5A6NC42 116 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 RHODO00212 210 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ATP2A1O14983 1001 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 RNMTO43148 476 aaKnown RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 KIF1CO43896 1103 aaKnown RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 RNF8O76064 485 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 JTBO76095 146 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 RECQL5O94762 991 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 MTA2O94776 668 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 PENKP01210 267 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 WNT1P04628 370 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 FYNP06241 537 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 CHRM5P08912 532 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 TFPIP10646 304 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ACTN1P12814 892 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 UNGP13051 313 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ERCC2P18074 760 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 TFEBP19484 476 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 AGAP20933 346 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ACADLP28330 430 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 RFC1P35251 1148 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ATP6V1E1P36543 226 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 HNF4AP41235 474 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 MATR3P43243 847 aaKnown RBP eCLIP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 GPR12P47775 334 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 AVPR1BP47901 424 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 TMPRSS3P57727 454 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 UBXN1Q04323 297 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 CXCL9Q07325 125 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 RALGDSQ12967 914 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ITGADQ13349 1161 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 NFE2L1Q14494 772 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ZNF169Q14929 603 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ARHGEF6Q15052 776 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 CDSNQ15517 529 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 HYAL4Q2M3T9 481 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 CERKLQ49MI3 558 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ALG10Q5BKT4 473 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ALG10BQ5I7T1 473 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ENTPD8Q5MY95 495 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 MPP7Q5T2T1 576 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 C6orf163Q5TEZ5 329 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 TAOK1Q7L7X3 1001 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 PIWIL3Q7Z3Z3 882 aaKnown RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 AMIGO2Q86SJ2 522 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 SERPINA11Q86U17 422 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 IQCHQ86VS3 1027 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 VRK3Q8IV63 474 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ARID3BQ8IVW6 561 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ADGRF4Q8IZF3 695 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 GUF1Q8N442 669 aaKnown RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 TMCO5AQ8N6Q1 288 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 LRRC57Q8N9N7 239 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 PNLDC1Q8NA58 520 aaKnown RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 OR8K5Q8NH50 307 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 IGSF8Q969P0 613 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 FAM162AQ96A26 154 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 MOAP1Q96BY2 351 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 CDHR1Q96JP9 859 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 PPP1R13BQ96KQ4 1090 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 COQ10AQ96MF6 247 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 SPAG5Q96R06 1193 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 CDK5RAP1Q96SZ6 601 aaKnown RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 PIMREGQ9BSJ6 248 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 SCNM1Q9BWG6 230 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 LHPPQ9H008 270 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 GOLPH3LQ9H4A5 285 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 MVB12BQ9H7P6 319 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 COPS7BQ9H9Q2 264 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 DDX4Q9NQI0 724 aaKnown RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 IL17RBQ9NRM6 502 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 SMPD4Q9NXE4 827 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 HAO2Q9NYQ3 351 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 GDE1Q9NZC3 331 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 CRNNQ9UBG3 495 aaPredicted RBP3.2□□□□□ -1.9
TRAV28-201ENST00000557548 NDRG3Q9UGV2 375 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ADAM21Q9UKJ8 722 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 UTS2RQ9UKP6 389 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 ZNF148Q9UQR1 794 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 BTBD3Q9Y2F9 522 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 FRMD4BQ9Y2L6 1034 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 RAP2CQ9Y3L5 183 aa3.2□□□□□ -1.9
TRAV28-201ENST00000557548 C17orf102A2RUQ5 167 aa3.19□□□□□ -1.9
TRAV28-201ENST00000557548 C2CD4BA6NLJ0 364 aa3.19□□□□□ -1.9
TRAV28-201ENST00000557548 FOXO6A8MYZ6 492 aa3.19□□□□□ -1.9
TRAV28-201ENST00000557548 TARM1B6A8C7 271 aa3.19□□□□□ -1.9
TRAV28-201ENST00000557548 VCYO14598 125 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms