RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CAPN5	O15484	640 aa	Predicted RBP	12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	UNG	P13051	313 aa	Predicted RBP	12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	GM2A	P17900	193 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	CR2	P20023	1033 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	RGR	P47804	291 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	PAPOLA	P51003	745 aa	Known RBP	12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	ZNF143	P52747	638 aa	Predicted RBP	12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	AIF1	P55008	147 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	GSC	P56915	257 aa	Predicted RBP	12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	NSUN2	Q08J23	767 aa	Known RBP eCLIP	12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	PTP4A2	Q12974	167 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	SQSTM1	Q13501	440 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	PEX6	Q13608	980 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	DCAF12	Q5T6F0	453 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	NKAIN2	Q5VXU1	208 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	DPPA4	Q7L190	304 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	PELI3	Q8N2H9	469 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	PMEPA1	Q969W9	287 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	DPYSL5	Q9BPU6	564 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	PHPT1	Q9NRX4	125 aa	Predicted RBP	12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	ARHGAP42	A6NI28	874 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	CCP110	O43303	1012 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	RAD1	O60671	282 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	MBD3	O95983	291 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	FUCA1	P04066	466 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	CEACAM5	P06731	702 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	MYCLP1	P12525	358 aa	Predicted RBP	12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	MPST	P25325	297 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	AK4	P27144	223 aa	Predicted RBP	12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	HTR7	P34969	479 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	SOX5	P35711	763 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	NSF	P46459	744 aa	Known RBP	12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	GNPDA1	P46926	289 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	NCAPH	Q15003	741 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	C3orf20	Q8ND61	904 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	CELF6	Q96J87	481 aa	Known RBP	12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	COQ10A	Q96MF6	247 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	CINP	Q9BW66	212 aa	Predicted RBP	12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	TEX101	Q9BY14	249 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	SLC39A8	Q9C0K1	460 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	KCTD5	Q9NXV2	234 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	RELN	P78509	3460 aa		12.66	□□□□□ -0.38
SHMT2-223	ENST00000556689	IGHV1OR21-1	A0A087WYE8	117 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	ANKRD62	A6NC57	917 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689		B4E171	279 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	TRAFD1	O14545	582 aa	Predicted RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	PPM1D	O15297	605 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	NKX2-8	O15522	239 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	CALB1	P05937	261 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	THRA	P10827	490 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	ERCC5	P28715	1186 aa	Predicted RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	TSPAN7	P41732	249 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	SCNN1B	P51168	640 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	RAB15	P59190	212 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	TPI1	P60174	286 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	POLR2F	P61218	127 aa	Known RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	UBE2H	P62256	183 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	CTBS	Q01459	385 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	RFTN1	Q14699	578 aa	Predicted RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	TMEM71	Q6P5X7	295 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	SLC30A9	Q6PML9	568 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	HEATR4	Q86WZ0	1026 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	FAM129C	Q86XR2	697 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	PHF13	Q86YI8	300 aa	Predicted RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	NRSN1	Q8IZ57	195 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	NAGS	Q8N159	534 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	C9orf43	Q8TAL5	461 aa	Predicted RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	PATE1	Q8WXA2	126 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	NUS1	Q96E22	293 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	SLC45A3	Q96JT2	553 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	PCDHB18P	Q96TA0	734 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	EFHD1	Q9BUP0	239 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	FRMD8	Q9BZ67	464 aa	Predicted RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	ZNF71	Q9NQZ8	489 aa	Predicted RBP	12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	OCIAD1	Q9NX40	245 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	KCNK4	Q9NYG8	393 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	B4GALT6	Q9UBX8	382 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	PILRA	Q9UKJ1	303 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	SUFU	Q9UMX1	484 aa		12.65	□□□□□ -0.38
SHMT2-223	ENST00000556689	CLEC18A	A5D8T8	446 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	EFCAB7	A8K855	629 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	DES	P17661	470 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	MAP4	P27816	1152 aa	Known RBP	12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	ADCY8	P40145	1251 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	RENBP	P51606	427 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	GPLD1	P80108	840 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	CLEC16A	Q2KHT3	1053 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	TCP11X2	Q5H9J9	407 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	CLEC18B	Q6UXF7	455 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	NLGN4X	Q8N0W4	816 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	CLEC18C	Q8NCF0	446 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	KIAA1143	Q96AT1	154 aa	Predicted RBP	12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	AHCYL2	Q96HN2	611 aa	Known RBP	12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	TEFM	Q96QE5	360 aa	Known RBP	12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	CNPY3	Q9BT09	278 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	VPS16	Q9H269	839 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	GAN	Q9H2C0	597 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	GPN2	Q9H9Y4	310 aa	Predicted RBP	12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	SP110	Q9HB58	689 aa		12.64	□□□□□ -0.39

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