RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TRMT13Q9NUP7 481 aaKnown RBP12.28□□□□□ -0.44
SHMT2-207ENST00000553837 GIN1Q9NXP7 522 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 MPP6Q9NZW5 540 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 SLC2A6Q9UGQ3 507 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 SLC39A10Q9ULF5 831 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 CDC14AQ9UNH5 594 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 B3GNT3Q9Y2A9 372 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 N6AMT1Q9Y5N5 214 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 GOLGA8QA0A0J9YX86 632 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 MAGEB16A2A368 324 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 GOLGA8OA6NCC3 632 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 GOLGA8NF8WBI6 632 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 H3BMQ9 156 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 AHSGP02765 367 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 MPOP05164 745 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 HSPA8P11142 646 aaKnown RBP12.28□□□□□ -0.44
SHMT2-207ENST00000553837 SAT1P21673 171 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 DCKP27707 260 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 HOXC13P31276 330 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 AVPR1AP37288 418 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 HK2P52789 917 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 MPP1Q00013 466 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 CTBSQ01459 385 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 RHDQ02161 417 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 TRIM25Q14258 630 aaKnown RBP12.28□□□□□ -0.44
SHMT2-207ENST00000553837 ZNF460Q14592 562 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 POU6F1Q14863 301 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 KCNA10Q16322 511 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 XKR5Q6UX68 686 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 ZC3HC1Q86WB0 502 aaKnown RBP12.28□□□□□ -0.44
SHMT2-207ENST00000553837 ZNF280BQ86YH2 543 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 DENND6AQ8IWF6 608 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 FAM47BQ8NA70 645 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 IPMKQ8NFU5 416 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 COG8Q96MW5 612 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 IL12RB2Q99665 862 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 SLC29A1Q99808 456 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 EFHD1Q9BUP0 239 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 TDRD1Q9BXT4 1180 aaKnown RBP12.28□□□□□ -0.44
SHMT2-207ENST00000553837 FTHL17Q9BXU8 183 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 NMRK2Q9NPI5 230 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 PRELID1Q9Y255 219 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 SNX13Q9Y5W8 968 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 SLC30A1Q9Y6M5 507 aa12.28□□□□□ -0.44
SHMT2-207ENST00000553837 FNDC1Q4ZHG4 1894 aaPredicted RBP12.27□□□□□ -0.44
SHMT2-207ENST00000553837 STX16-NPEPL1H3BU86 382 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 TK2O00142 265 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 HLA-DQB2P05538 268 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 CHRNGP07510 517 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 CCNCP24863 283 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ADRA1AP35348 466 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 DPP6P42658 865 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 GPR15P49685 360 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 BMXP51813 675 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ZNF135P52742 658 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-207ENST00000553837 CSE1LP55060 971 aaKnown RBP12.27□□□□□ -0.45
SHMT2-207ENST00000553837 RPS3AP61247 264 aaKnown RBP12.27□□□□□ -0.45
SHMT2-207ENST00000553837 PTK2BQ14289 1009 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 NHSL2Q5HYW2 709 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 NOMO2Q5JPE7 1267 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 NAPEPLDQ6IQ20 393 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 PPP4R4Q6NUP7 873 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ESRP1Q6NXG1 681 aaKnown RBP12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ZBTB49Q6ZSB9 765 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 KDELC2Q7Z4H8 507 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ZNF598Q86UK7 904 aaKnown RBP12.27□□□□□ -0.45
SHMT2-207ENST00000553837 C11orf74Q86VG3 221 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ZNF354CQ86Y25 554 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ATPAF2Q8N5M1 289 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 AGR3Q8TD06 166 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 TFAP2CQ92754 450 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 SUSD3Q96L08 255 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 NSMCE3Q96MG7 304 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 GPR22Q99680 433 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 OLFM1Q99784 485 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 TBL1YQ9BQ87 522 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 FICDQ9BVA6 458 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 GATA5Q9BWX5 397 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-207ENST00000553837 NPLQ9BXD5 320 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-207ENST00000553837 NDEL1Q9GZM8 345 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ATXN3LQ9H3M9 355 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 RETREG1Q9H6L5 497 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 NMRAL1Q9HBL8 299 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 GLOD4Q9HC38 313 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ZFYVE28Q9HCC9 887 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ADA2Q9NZK5 511 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 ERGIC3Q9Y282 383 aa12.27□□□□□ -0.45
SHMT2-207ENST00000553837 A0A1W2PQH9 124 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CFAP99D6REC4 459 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 HDAC3O15379 428 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SNAP91O60641 907 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 DDHD2O94830 711 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CSPG5O95196 566 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 MOCS2O96007 188 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 TCN1P20061 433 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CCND3P30281 292 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 GRIK1P39086 918 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CHRNA4P43681 627 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 GLRBP48167 497 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 ARCN1P48444 511 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms