RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TNFAIP3P21580 790 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 TEAD1P28347 426 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 SCNN1BP51168 640 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 B4GALNT1Q00973 533 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 KCNC4Q03721 635 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 LBRQ14739 615 aaKnown RBP12.87□□□□□ -0.35
PTCH1-218ENST00000548945 ACOX1Q15067 660 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 TGIF1Q15583 401 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 CA9Q16790 459 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 LINC00303Q3SY05 128 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 MANEAQ5SRI9 462 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 TMEM164Q5U3C3 297 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 APTXQ7Z2E3 356 aaKnown RBP12.87□□□□□ -0.35
PTCH1-218ENST00000548945 PIM3Q86V86 326 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 DTX1Q86Y01 620 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 CBARPQ8N350 705 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-218ENST00000548945 ARFGAP1Q8N6T3 406 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 NPWQ8N729 165 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 EXD3Q8N9H8 876 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 ZSCAN1Q8NBB4 408 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 PEBP4Q96S96 227 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 SEMA3CQ99985 751 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 TEX101Q9BY14 249 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 GSDMCQ9BYG8 508 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 PHPT1Q9NRX4 125 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-218ENST00000548945 ANO10Q9NW15 660 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 TAS2R14Q9NYV8 317 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 AKAP7Q9P0M2 348 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-218ENST00000548945 B4GALT6Q9UBX8 382 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 PCDHB11Q9Y5F2 797 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 NBASA2RRP1 2371 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 PRAMEF33A0A0G2JMD5 474 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 C9orf172C9J069 976 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 PSMD11O00231 422 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 HGSO14964 777 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 PRAMEF10O60809 474 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 WISP1O95388 367 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 GZMAP12544 262 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 ITIH1P19827 911 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 CDK11BP21127 795 aaKnown RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 MIPP30301 263 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 ETV5P41161 510 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 GPR3P46089 330 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 ILF3Q12906 894 aaKnown RBP eCLIP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 DPYSQ14117 519 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 MAP9Q49MG5 647 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 PPP6R3Q5H9R7 873 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 RALGPS1Q5JS13 557 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 PHF19Q5T6S3 580 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 CYP4V2Q6ZWL3 525 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 NRROSQ86YC3 692 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 PELI3Q8N2H9 469 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 CCL4L1Q8NHW4 92 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 USP7Q93009 1102 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 NUS1Q96E22 293 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 ARHGAP9Q9BRR9 750 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 FRMD8Q9BZ67 464 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 FAM117AQ9C073 453 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 ZWILCHQ9H900 591 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 CARS2Q9HA77 564 aaKnown RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 STARD5Q9NSY2 213 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 CWC15Q9P013 229 aaKnown RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 PCSK1NQ9UHG2 260 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 PCDHGA4Q9Y5G9 962 aa12.86□□□□□ -0.35
PTCH1-218ENST00000548945 HEMK1Q9Y5R4 338 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-218ENST00000548945 RHPN2P1A8MT19 583 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 TEX33O43247 280 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 B4GAT1O43505 415 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 LRCH4O75427 683 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 HEXIM1O94992 359 aaKnown RBP12.85□□□□□ -0.35
PTCH1-218ENST00000548945 FGF1P05230 155 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 CEACAM5P06731 702 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 CYP2A6P11509 494 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-218ENST00000548945 CR2P20023 1033 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 VIPR1P32241 457 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 PCK1P35558 622 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 SLC10A7Q0GE19 358 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 SQSTM1Q13501 440 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 TRA2AQ13595 282 aaKnown RBP eCLIP12.85□□□□□ -0.35
PTCH1-218ENST00000548945 ZNF235Q14590 738 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 CNGA3Q16281 694 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 STX1AQ16623 288 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 SASS6Q6UVJ0 657 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 ARHGAP36Q6ZRI8 547 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 TMPRSS9Q7Z410 1059 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 HEATR4Q86WZ0 1026 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 SFTPA2Q8IWL1 248 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 ZDHHC1Q8WTX9 485 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 DTD2Q96FN9 168 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 NSMCE3Q96MG7 304 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 NUDCD1Q96RS6 583 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 DPYSL5Q9BPU6 564 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 SEMA6CQ9H3T2 930 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 SPATS2LQ9NUQ6 558 aaKnown RBP12.85□□□□□ -0.35
PTCH1-218ENST00000548945 WDR70Q9NW82 654 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 FOXJ2Q9P0K8 574 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 TAAR2Q9P1P5 351 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 MOSPD1Q9UJG1 213 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 PHTF1Q9UMS5 762 aa12.85□□□□□ -0.35
PTCH1-218ENST00000548945 SCINQ9Y6U3 715 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms