RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 VEPH1Q14D04 833 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 LARS2Q15031 903 aaKnown RBP4.38□□□□□ -1.71
SCAF11-210ENST00000547654 AWAT1Q58HT5 328 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 SERTAD4-AS1Q5TG53 156 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 CST9LP1Q5W188 147 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 KIAA0930Q6ICG6 404 aaPredicted RBP4.38□□□□□ -1.71
SCAF11-210ENST00000547654 IYDQ6PHW0 289 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 CNSTQ6PJW8 725 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 C17orf99Q6UX52 265 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 IL20RBQ6UXL0 311 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 GLDNQ6ZMI3 551 aaPredicted RBP4.38□□□□□ -1.71
SCAF11-210ENST00000547654 BTN2A1Q7KYR7 527 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 MINDY1Q8N5J2 469 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 TRIML1Q8N9V2 468 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 EXOC4Q96A65 974 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 MOAP1Q96BY2 351 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 MMABQ96EY8 250 aaPredicted RBP4.38□□□□□ -1.71
SCAF11-210ENST00000547654 VCPIP1Q96JH7 1222 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 TUBB6Q9BUF5 446 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 CCDC106Q9BWC9 280 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 ACAT2Q9BWD1 397 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 CADM1Q9BY67 442 aaKnown RBP4.38□□□□□ -1.71
SCAF11-210ENST00000547654 RNF26Q9BY78 433 aaPredicted RBP4.38□□□□□ -1.71
SCAF11-210ENST00000547654 MLXIPLQ9NP71 852 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 ABHD10Q9NUJ1 306 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 ARHGEF38Q9NXL2 777 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 UPB1Q9UBR1 384 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 AMACRQ9UHK6 382 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 TMCC3Q9ULS5 477 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 SHROOM2Q13796 1616 aa4.38□□□□□ -1.71
SCAF11-210ENST00000547654 KIF21BO75037 1637 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 ARHGAP10A1A4S6 786 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 OR2A25A4D2G3 310 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 USP17L23D6RBM5 183 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 IPO8O15397 1037 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 SYNCRIPO60506 623 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 SLC25A12O75746 678 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 RNF8O76064 485 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 TPPPO94811 219 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 CBX6O95503 412 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 FTCDO95954 541 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 TUBBP07437 444 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 ALDOCP09972 364 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PRF1P14222 555 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 HOXB9P17482 250 aaPredicted RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 ERCC2P18074 760 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 HLA-DPA1P20036 260 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 SKIV2L2P42285 1042 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 GABRB2P47870 512 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 AMPHP49418 695 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 SLC37A1P57057 533 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 GPC5P78333 572 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 CFHR1Q03591 330 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 COASYQ13057 564 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 ALCAMQ13740 583 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 TNIP1Q15025 636 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PPP2R5BQ15173 497 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 TWIST1Q15672 202 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PKN2Q16513 984 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 LETM2Q2VYF4 491 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 C2orf76Q3KRA6 126 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 KRTCAP3Q53RY4 240 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 DNAJC21Q5F1R6 531 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 JADE1Q6IE81 842 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 ALKBH5Q6P6C2 394 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 TRAT1Q6PIZ9 186 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PIWIL3Q7Z3Z3 882 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 RNF144BQ7Z419 303 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 GPAT4Q86UL3 456 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 C2CD4CQ8TF44 421 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PSPC1Q8WXF1 523 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 AKAP1Q92667 903 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 ZKSCAN4Q969J2 545 aaPredicted RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PRR11Q96HE9 360 aaPredicted RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 FER1L6-AS2Q96M78 137 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 HS6ST2Q96MM7 605 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PAFAH2Q99487 392 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 SRSF8Q9BRL6 282 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 NAA11Q9BSU3 229 aaPredicted RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 EFHD1Q9BUP0 239 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 IFIH1Q9BYX4 1025 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 FOXP1Q9H334 677 aaPredicted RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 MMADHCQ9H3L0 296 aaPredicted RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 HRH4Q9H3N8 390 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PLK3Q9H4B4 646 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 SLC6A13Q9NSD5 602 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 DDX43Q9NXZ2 648 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PSD3Q9NYI0 1048 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 TFCP2L1Q9NZI6 479 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 HDAC6Q9UBN7 1215 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 ANAPC2Q9UJX6 822 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 PA2G4Q9UQ80 394 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 KLHL20Q9Y2M5 609 aa4.37□□□□□ -1.71
SCAF11-210ENST00000547654 AAR2Q9Y312 384 aaKnown RBP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 AQRO60306 1485 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCAF11-210ENST00000547654 TTC3P53804 2025 aa4.36□□□□□ -1.71
SCAF11-210ENST00000547654 ADAMTSL3P82987 1691 aa4.36□□□□□ -1.71
SCAF11-210ENST00000547654 LY6G6EA0A0G2JKS1 128 aa4.36□□□□□ -1.71
SCAF11-210ENST00000547654 OR6C68A6NDL8 312 aa4.36□□□□□ -1.71
SCAF11-210ENST00000547654 LRRC72A6NJI9 287 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms