RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CDKN3Q16667 212 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 PDPK2PQ6A1A2 396 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 CROCCP2Q86T23 111 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 HDDC3Q8N4P3 179 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 AADATQ8N5Z0 425 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 FLCNQ8NFG4 579 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 CALML6Q8TD86 181 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 ASB12Q8WXK4 309 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 PBXIP1Q96AQ6 731 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 NECAB3Q96P71 396 aaPredicted RBP16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 ITM2CQ9NQX7 267 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 NSMCE4AQ9NXX6 385 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 IL17CQ9P0M4 197 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 FADS3Q9Y5Q0 445 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 NPIPB15A6NHN6 443 aaPredicted RBP16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 RNASEH2AO75792 299 aaKnown RBP16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 FAM153BP0C7A2 387 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 ELFN1P0C7U0 828 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 STC1P52823 247 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 FAM153CQ494X1 144 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 ANKRD20A4Q4UJ75 823 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 BEND6Q5SZJ8 279 aaPredicted RBP16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 FAM182AQ5T1J6 154 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 LRRC66Q68CR7 880 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 CRTC1Q6UUV9 634 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 MPP5Q8N3R9 675 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 MDGA1Q8NFP4 955 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 CDKL2Q92772 493 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 CCDC77Q9BR77 488 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 NINJ2Q9NZG7 142 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 SPO11Q9Y5K1 396 aa16.02■□□□□ 0.16
PRPF40A-212ENST00000545856 A0A087WUV0 522 aaPredicted RBP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 ANTXRLA6NF34 631 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 LRRC72A6NJI9 287 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 RIPK2O43353 540 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 RPP40O75818 363 aaKnown RBP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 NUDT17P0C025 328 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 TPH1P17752 444 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 CTPS1P17812 591 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 ABL2P42684 1182 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 NUBP1P53384 320 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 FAM193AP78312 1265 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 RALGDSQ12967 914 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 SEPT6Q14141 434 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 CNGA3Q16281 694 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 LONRF1Q17RB8 773 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 KCTD19Q17RG1 926 aaPredicted RBP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 DENND2CQ68D51 928 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 AFTPHQ6ULP2 937 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 UNC5AQ6ZN44 842 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 LYSMD3Q7Z3D4 306 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 GALNT7Q86SF2 657 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 C11orf74Q86VG3 221 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 GSPT2Q8IYD1 628 aaKnown RBP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 AGGF1Q8N302 714 aaeCLIP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 CXorf40AQ8TE69 158 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 ZNF669Q96BR6 464 aaPredicted RBP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 WDR83Q9BRX9 315 aaKnown RBP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 C1QTNF7Q9BXJ2 289 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 LRRC4CQ9HCJ2 640 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 PRMT8Q9NR22 394 aaPredicted RBP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 CHRAC1Q9NRG0 131 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 BCCIPQ9P287 314 aaKnown RBP eCLIP16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 VPS9D1Q9Y2B5 631 aa16.01■□□□□ 0.15
PRPF40A-212ENST00000545856 ZCWPW2A0A1B0GU75 182 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 A0A1W2PP55 124 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 NEMP1O14524 444 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 PFDN6O15212 129 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 IVLP07476 585 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 ALPIP09923 528 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 LHCGRP22888 699 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 TEAD1P28347 426 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 PPARGP37231 505 aaPredicted RBP16■□□□□ 0.15
PRPF40A-212ENST00000545856 TPMTP51580 245 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 EIF3BP55884 814 aaKnown RBP16■□□□□ 0.15
PRPF40A-212ENST00000545856 RPS21P63220 83 aaKnown RBP16■□□□□ 0.15
PRPF40A-212ENST00000545856 PRAMEP78395 509 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 MTAPQ13126 283 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 STAT4Q14765 748 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 FASTKD3Q14CZ7 662 aaKnown RBP16■□□□□ 0.15
PRPF40A-212ENST00000545856 KLHL38Q2WGJ6 581 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 GPR33Q49SQ1 333 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 AARS2Q5JTZ9 985 aaKnown RBP16■□□□□ 0.15
PRPF40A-212ENST00000545856 KIAA1324Q6UXG2 1013 aaKnown RBP16■□□□□ 0.15
PRPF40A-212ENST00000545856 LIPIQ6XZB0 460 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 KIAA0408Q6ZU52 694 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 C3orf62Q6ZUJ4 267 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 TRIM69Q86WT6 500 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 OR13J1Q8NGT2 312 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 ANKRD7Q92527 254 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 TBRG4Q969Z0 631 aaKnown RBP eCLIP16■□□□□ 0.151e-6■■■□□ 17.7
PRPF40A-212ENST00000545856 CERS2Q96G23 380 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 C9orf72Q96LT7 481 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 PWWP2AQ96N64 755 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 CYTH2Q99418 400 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 FAM167BQ9BTA0 163 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 FAM126AQ9BYI3 521 aaPredicted RBP16■□□□□ 0.15
PRPF40A-212ENST00000545856 BTBD1Q9H0C5 482 aa16■□□□□ 0.15
PRPF40A-212ENST00000545856 SEMA4AQ9H3S1 761 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms