RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 RPF2Q9H7B2 306 aaKnown RBP8.77□□□□□ -1.01
TDP1-204ENST00000545686 ELP3Q9H9T3 547 aa8.77□□□□□ -1.01
TDP1-204ENST00000545686 CXorf21Q9HAI6 301 aa8.77□□□□□ -1.01
TDP1-204ENST00000545686 FNIP2Q9P278 1114 aa8.77□□□□□ -1.01
TDP1-204ENST00000545686 MAP10Q9P2G4 905 aa8.77□□□□□ -1.01
TDP1-204ENST00000545686 AURKCQ9UQB9 309 aa8.77□□□□□ -1.01
TDP1-204ENST00000545686 GINS2Q9Y248 185 aa8.77□□□□□ -1.01
TDP1-204ENST00000545686 TLL2Q9Y6L7 1015 aa8.77□□□□□ -1.01
TDP1-204ENST00000545686 GIPC1O14908 333 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 MAGEB3O15480 346 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 SLC7A4O43246 635 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 VPS4BO75351 444 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 HLA-DQB2P05538 268 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 GFAPP14136 432 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 ARSAP15289 507 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 ADCYAP1R1P41586 468 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CTBSQ01459 385 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 GRSF1Q12849 480 aaKnown RBP eCLIP8.76□□□□□ -1.01
TDP1-204ENST00000545686 SEPT6Q14141 434 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 BRMS1LQ5PSV4 323 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 MANEALQ5VSG8 457 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 ARHGAP36Q6ZRI8 547 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 SLC15A3Q8IY34 581 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 LEMD2Q8NC56 503 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 FATE1Q969F0 183 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 PHF21BQ96EK2 531 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 AKTIPQ9H8T0 292 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CSNK1G1Q9HCP0 422 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 ATP13A1Q9HD20 1204 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 SDR39U1Q9NRG7 319 aaPredicted RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 RNF19AQ9NV58 838 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 INTS10Q9NVR2 710 aaKnown RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 SMPD3Q9NY59 655 aaPredicted RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 RNF103-CHMP3A0A140T963 221 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 TYW5A2RUC4 315 aaKnown RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 MBLAC1A4D2B0 266 aaPredicted RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 AURKAO14965 403 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 ARPC2O15144 300 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 ACOX3O15254 700 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CLOCKO15516 846 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 NOL3O60936 208 aaKnown RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 PMPCBO75439 489 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 SUPT7LO94864 414 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CPNE6O95741 557 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 RFC2P35250 354 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 PLK1P53350 603 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 EIF4EBP2Q13542 120 aaPredicted RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 RAB39AQ14964 217 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 UNC50Q53HI1 259 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 AFMIDQ63HM1 303 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 KANK2Q63ZY3 851 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CLEC6AQ6EIG7 209 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 KDELC1Q6UW63 502 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 USP51Q70EK9 711 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 RNF135Q8IUD6 432 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CILP2Q8IUL8 1156 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 PHYKPLQ8IUZ5 450 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 TBC1D21Q8IYX1 336 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 DHRSXQ8N5I4 330 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 ZBTB8BQ8NAP8 495 aaPredicted RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 LRRC58Q96CX6 371 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 THAP11Q96EK4 314 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 PCED1BQ96HM7 432 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 COX4I2Q96KJ9 171 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 PPP1R10Q96QC0 940 aaKnown RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 SEZ6LQ9BYH1 1024 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 SLC25A51Q9H1U9 297 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 MFSD1Q9H3U5 465 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 POPDC3Q9HBV1 291 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 OSER1Q9NX31 292 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 ZNF639Q9UID6 485 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CDH9Q9ULB4 789 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 OAZ3Q9UMX2 235 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 CDC14AQ9UNH5 594 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 VWA7Q9Y334 891 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 IPPQ9Y573 584 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 PCDHA9Q9Y5H5 950 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 FADS3Q9Y5Q0 445 aa8.76□□□□□ -1.01
TDP1-204ENST00000545686 HEMK1Q9Y5R4 338 aaPredicted RBP8.76□□□□□ -1.01
TDP1-204ENST00000545686 IQCA1LA6NCM1 817 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 H0YAE9 185 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 ATE1O95260 518 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 INHBBP09529 407 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 IDO1P14902 403 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 CAPN3P20807 821 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 SLC6A2P23975 617 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 SERPINH1P50454 418 aaKnown RBP8.75□□□□□ -1.01
TDP1-204ENST00000545686 HLCSP50747 726 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 GRIK2Q13002 908 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 SNX17Q15036 470 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 DUSP28Q4G0W2 176 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 AASDHQ4L235 1098 aaPredicted RBP8.75□□□□□ -1.01
TDP1-204ENST00000545686 PITRM1Q5JRX3 1037 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 ZNF280DQ6N043 979 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 RAB44Q7Z6P3 723 aaPredicted RBP8.75□□□□□ -1.01
TDP1-204ENST00000545686 ISCA2Q86U28 154 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 SPPL2CQ8IUH8 684 aa8.75□□□□□ -1.01
TDP1-204ENST00000545686 CMTR2Q8IYT2 770 aaKnown RBP8.75□□□□□ -1.01
TDP1-204ENST00000545686 RNF168Q8IYW5 571 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms