RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MAP2K5Q13163 448 aa15.06■□□□□ 0
USP28-214ENST00000545540 STX5Q13190 355 aa15.06■□□□□ 0
USP28-214ENST00000545540 RPS6KA2Q15349 733 aa15.06■□□□□ 0
USP28-214ENST00000545540 KDELC1Q6UW63 502 aa15.06■□□□□ 0
USP28-214ENST00000545540 CNTN4Q8IWV2 1026 aa15.06■□□□□ 0
USP28-214ENST00000545540 TSPAN14Q8NG11 270 aa15.06■□□□□ 0
USP28-214ENST00000545540 MAELQ96JY0 434 aaKnown RBP15.06■□□□□ 0
USP28-214ENST00000545540 CSNK1G1Q9HCP0 422 aa15.06■□□□□ 0
USP28-214ENST00000545540 BPIFA1Q9NP55 256 aa15.06■□□□□ 0
USP28-214ENST00000545540 GMIPQ9P107 970 aa15.06■□□□□ 0
USP28-214ENST00000545540 RAB26Q9ULW5 256 aa15.06■□□□□ 0
USP28-214ENST00000545540 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.06■□□□□ 0
USP28-214ENST00000545540 CDH23Q9H251 3354 aa15.06■□□□□ 0
USP28-214ENST00000545540 HAS3O00219 553 aa15.05■□□□□ 0
USP28-214ENST00000545540 NME4O00746 187 aa15.05■□□□□ 0
USP28-214ENST00000545540 CELF2O95319 508 aaKnown RBP15.05■□□□□ 0
USP28-214ENST00000545540 GOT2P00505 430 aaKnown RBP15.05■□□□□ 0
USP28-214ENST00000545540 BMP1P13497 986 aa15.05■□□□□ 0
USP28-214ENST00000545540 HADHAP40939 763 aa15.05■□□□□ 0
USP28-214ENST00000545540 XIAPP98170 497 aa15.05■□□□□ 0
USP28-214ENST00000545540 ZFP1Q6P2D0 407 aa15.05■□□□□ 0
USP28-214ENST00000545540 DHFR2Q86XF0 187 aa15.05■□□□□ 0
USP28-214ENST00000545540 ZNF786Q8N393 782 aa15.05■□□□□ 0
USP28-214ENST00000545540 RTL3Q8N8U3 475 aaKnown RBP15.05■□□□□ 0
USP28-214ENST00000545540 RPRD1AQ96P16 312 aaPredicted RBP15.05■□□□□ 0
USP28-214ENST00000545540 SEPHS2Q99611 448 aa15.05■□□□□ 0
USP28-214ENST00000545540 MAP10Q9P2G4 905 aa15.05■□□□□ 0
USP28-214ENST00000545540 HCSTQ9UBK5 93 aa15.05■□□□□ 0
USP28-214ENST00000545540 ZSWIM8A7E2V4 1837 aa15.05■□□□□ 0
USP28-214ENST00000545540 A0A0D9SEW6 157 aa15.05■□□□□ -0
USP28-214ENST00000545540 NPHS1O60500 1241 aa15.05■□□□□ -0
USP28-214ENST00000545540 KPNA6O60684 536 aa15.05■□□□□ -0
USP28-214ENST00000545540 SRP72O76094 671 aaKnown RBP15.05■□□□□ -0
USP28-214ENST00000545540 CDK14O94921 469 aa15.05■□□□□ -0
USP28-214ENST00000545540 MAP7Q14244 749 aa15.05■□□□□ -0
USP28-214ENST00000545540 ARTNQ5T4W7 220 aa15.05■□□□□ -0
USP28-214ENST00000545540 KIAA0930Q6ICG6 404 aaPredicted RBP15.05■□□□□ -0
USP28-214ENST00000545540 USP50Q70EL3 339 aaPredicted RBP15.05■□□□□ -0
USP28-214ENST00000545540 SETD3Q86TU7 594 aaPredicted RBP15.05■□□□□ -0
USP28-214ENST00000545540 RSPH1Q8WYR4 309 aa15.05■□□□□ -0
USP28-214ENST00000545540 ABTB1Q969K4 478 aaPredicted RBP15.05■□□□□ -0
USP28-214ENST00000545540 SPON2Q9BUD6 331 aa15.05■□□□□ -0
USP28-214ENST00000545540 ABCC13Q9NSE7 274 aa15.05■□□□□ -0
USP28-214ENST00000545540 A0A087X1B8 175 aa15.05■□□□□ -0
USP28-214ENST00000545540 MMP2P08253 660 aa15.05■□□□□ -0
USP28-214ENST00000545540 COL6A2P12110 1019 aa15.05■□□□□ -0
USP28-214ENST00000545540 HGFP14210 728 aa15.05■□□□□ -0
USP28-214ENST00000545540 GALK1P51570 392 aa15.05■□□□□ -0
USP28-214ENST00000545540 RHDQ02161 417 aa15.05■□□□□ -0
USP28-214ENST00000545540 FAM110CQ1W6H9 321 aa15.05■□□□□ -0
USP28-214ENST00000545540 ZNF678Q5SXM1 525 aa15.05■□□□□ -0
USP28-214ENST00000545540 FAM171BQ6P995 826 aa15.05■□□□□ -0
USP28-214ENST00000545540 CYGBQ8WWM9 190 aa15.05■□□□□ -0
USP28-214ENST00000545540 NCSTNQ92542 709 aa15.05■□□□□ -0
USP28-214ENST00000545540 BHMTQ93088 406 aa15.05■□□□□ -0
USP28-214ENST00000545540 TSGA13Q96PP4 275 aa15.05■□□□□ -0
USP28-214ENST00000545540 TUBB1Q9H4B7 451 aa15.05■□□□□ -0
USP28-214ENST00000545540 HSFX1Q9UBD0 423 aa15.05■□□□□ -0
USP28-214ENST00000545540 RNF103-CHMP3A0A140T963 221 aa15.04■□□□□ -0
USP28-214ENST00000545540 CCDC162PA2VCL2 907 aa15.04■□□□□ -0
USP28-214ENST00000545540 PEX11BO96011 259 aa15.04■□□□□ -0
USP28-214ENST00000545540 ASLP04424 464 aa15.04■□□□□ -0
USP28-214ENST00000545540 MLLT6P55198 1093 aaPredicted RBP15.04■□□□□ -0
USP28-214ENST00000545540 PRKCQQ04759 706 aa15.04■□□□□ -0
USP28-214ENST00000545540 YWHAHQ04917 246 aaPredicted RBP15.04■□□□□ -0
USP28-214ENST00000545540 PLCL1Q15111 1095 aa15.04■□□□□ -0
USP28-214ENST00000545540 TBCELQ5QJ74 424 aa15.04■□□□□ -0
USP28-214ENST00000545540 FBXL20Q96IG2 436 aa15.04■□□□□ -0
USP28-214ENST00000545540 ACBD6Q9BR61 282 aa15.04■□□□□ -0
USP28-214ENST00000545540 MEAF6Q9HAF1 191 aa15.04■□□□□ -0
USP28-214ENST00000545540 RAD54BQ9Y620 910 aa15.04■□□□□ -0
USP28-214ENST00000545540 SUPT3HB4E1H0 165 aa15.04■□□□□ -0
USP28-214ENST00000545540 INPP4BO15327 924 aa15.04■□□□□ -0
USP28-214ENST00000545540 CACNG3O60359 315 aa15.04■□□□□ -0
USP28-214ENST00000545540 SUPT3HO75486 399 aa15.04■□□□□ -0
USP28-214ENST00000545540 STT3AP46977 705 aa15.04■□□□□ -0
USP28-214ENST00000545540 STX1BP61266 288 aa15.04■□□□□ -0
USP28-214ENST00000545540 TSPY1Q01534 308 aa15.04■□□□□ -0
USP28-214ENST00000545540 PPP1R8Q12972 351 aaKnown RBP15.04■□□□□ -0
USP28-214ENST00000545540 DYNC1I2Q13409 638 aaKnown RBP15.04■□□□□ -0
USP28-214ENST00000545540 B3GNT6Q6ZMB0 384 aa15.04■□□□□ -0
USP28-214ENST00000545540 SNRNP27Q8WVK2 155 aaKnown RBP15.04■□□□□ -0
USP28-214ENST00000545540 PARK7Q99497 189 aaKnown RBP15.04■□□□□ -0
USP28-214ENST00000545540 MUC3BQ9H195 1237 aa15.04■□□□□ -0
USP28-214ENST00000545540 EML4Q9HC35 981 aaKnown RBP15.04■□□□□ -0
USP28-214ENST00000545540 IQCF5A8MTL0 148 aa15.04■□□□□ -0
USP28-214ENST00000545540 TRIM24O15164 1050 aa15.04■□□□□ -0
USP28-214ENST00000545540 GGT5P36269 586 aa15.04■□□□□ -0
USP28-214ENST00000545540 OR1G1P47890 313 aa15.04■□□□□ -0
USP28-214ENST00000545540 SQLEQ14534 574 aa15.04■□□□□ -0
USP28-214ENST00000545540 UGT3A1Q6NUS8 523 aa15.04■□□□□ -0
USP28-214ENST00000545540 FBXL22Q6P050 247 aa15.04■□□□□ -0
USP28-214ENST00000545540 LARP4Q71RC2 724 aaKnown RBP eCLIP15.04■□□□□ -0
USP28-214ENST00000545540 TWIST2Q8WVJ9 160 aa15.04■□□□□ -0
USP28-214ENST00000545540 UBXN10Q96LJ8 280 aa15.04■□□□□ -0
USP28-214ENST00000545540 ASB1Q9Y576 335 aa15.04■□□□□ -0
USP28-214ENST00000545540 SMIM31A0A1B0GVY4 71 aa15.03■□□□□ -0
USP28-214ENST00000545540 CDC7O00311 574 aa15.03■□□□□ -0
USP28-214ENST00000545540 CRCPO75575 148 aa15.03■□□□□ -0
USP28-214ENST00000545540 MS4A13Q5J8X5 152 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms