RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	PDF	Q9HBH1	243 aa		7.78	□□□□□ -1.16
SNHG1-223	ENST00000545440	IFNK	Q9P0W0	207 aa		7.78	□□□□□ -1.16
SNHG1-223	ENST00000545440	KLHL3	Q9UH77	587 aa		7.78	□□□□□ -1.16
SNHG1-223	ENST00000545440	APOBEC2	Q9Y235	224 aa	Known RBP	7.78	□□□□□ -1.16
SNHG1-223	ENST00000545440	NEUROG3	Q9Y4Z2	214 aa		7.78	□□□□□ -1.16
SNHG1-223	ENST00000545440	COL27A1	Q8IZC6	1860 aa	Predicted RBP	7.78	□□□□□ -1.16
SNHG1-223	ENST00000545440	RP1	P56715	2156 aa		7.78	□□□□□ -1.16
SNHG1-223	ENST00000545440	SCN8A	Q9UQD0	1980 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	ASXL3	Q9C0F0	2248 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	KRIT1	O00522	736 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	WNT9A	O14904	365 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	TSPAN6	O43657	245 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	PCDH8	O95206	1070 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	POP4	O95707	220 aa	Known RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	HNRNPA2B1	P22626	353 aa	Known RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	AKT2	P31751	481 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	HNRNPH3	P31942	346 aa	Known RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	RXRG	P48443	463 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	HCAR3	P49019	387 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	RHOA	P61586	193 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	RPS21	P63220	83 aa	Known RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	IL9R	Q01113	521 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	TRIM14	Q14142	442 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	STAT4	Q14765	748 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	GRM3	Q14832	879 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	PPP2R5E	Q16537	467 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	DPYSL2	Q16555	572 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	CA9	Q16790	459 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	TMEM201	Q5SNT2	666 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	AFMID	Q63HM1	303 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC6A19	Q695T7	634 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	UNQ6494/PRO21346	Q6UXR6	183 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	DNAAF5	Q86Y56	855 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	PHACTR4	Q8IZ21	702 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	RYBP	Q8N488	228 aa	Predicted RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	NIPA2	Q8N8Q9	360 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	FAM13C	Q8NE31	585 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	OR6K2	Q8NGY2	324 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	VOPP1	Q96AW1	172 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	7.77	□□□□□ -1.17	4e-59	■■■□□ 16.1
SNHG1-223	ENST00000545440	SCNM1	Q9BWG6	230 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	XPO4	Q9C0E2	1151 aa	Known RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	LRRC19	Q9H756	370 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZWILCH	Q9H900	591 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	GPATCH2L	Q9NWQ4	482 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	UBA2	Q9UBT2	640 aa	Predicted RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	BTBD3	Q9Y2F9	522 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	LUC7L2	Q9Y383	392 aa	Known RBP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	MFHAS1	Q9Y4C4	1052 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	FADS3	Q9Y5Q0	445 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	ACTL7B	Q9Y614	415 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	ACTL7A	Q9Y615	435 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	WDFY3	Q8IZQ1	3526 aa		7.77	□□□□□ -1.17
SNHG1-223	ENST00000545440	ASPM	Q8IZT6	3477 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440		A0A087X0T9	212 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	TSPAN11	A1L157	253 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	FAM221B	A6H8Z2	402 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	TMEM8B	A6NDV4	472 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ARHGAP42	A6NI28	874 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	C16orf96	A6NNT2	1141 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440		A6NNZ2	444 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC31A1	O15431	190 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	CBFA2T2	O43439	604 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	TNFSF14	O43557	240 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	HYAL3	O43820	417 aa	Predicted RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	PRAMEF11	O60813	436 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	TOP3B	O95985	862 aa	Known RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	CYP1A2	P05177	515 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	UGT2B4	P06133	528 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	FAM228B	P0C875	321 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	PRLR	P16471	622 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	LOR	P23490	312 aa	Predicted RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	COL8A1	P27658	744 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	NOS3	P29474	1203 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	CASP14	P31944	242 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SUOX	P51687	545 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	RAD51	Q06609	339 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	DPYS	Q14117	519 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	PIGH	Q14442	188 aa	Predicted RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SHB	Q15464	509 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ST3GAL2	Q16842	350 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	MYLK3	Q32MK0	819 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	PPP6R3	Q5H9R7	873 aa	Predicted RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SEL1L3	Q68CR1	1132 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SPECC1L	Q69YQ0	1117 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ALKBH5	Q6P6C2	394 aa	Known RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	PAOX	Q6QHF9	649 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	KYAT3	Q6YP21	454 aa	Known RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ABI3BP	Q7Z7G0	1075 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SPATS2	Q86XZ4	545 aa	Known RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	NPW	Q8N729	165 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	C2CD4A	Q8NCU7	369 aa	Predicted RBP	7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	DENND6B	Q8NEG7	585 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	SAP25	Q8TEE9	199 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	TEKT4	Q8WW24	435 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	ASB12	Q8WXK4	309 aa		7.76	□□□□□ -1.17
SNHG1-223	ENST00000545440	GATA6	Q92908	595 aa		7.76	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms