RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 NPWQ8N729 165 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ZSCAN1Q8NBB4 408 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 CCL4L1Q8NHW4 92 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 USP7Q93009 1102 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 NUS1Q96E22 293 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 PEBP4Q96S96 227 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 SEMA3CQ99985 751 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ARHGAP9Q9BRR9 750 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 TEX101Q9BY14 249 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 FAM117AQ9C073 453 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ZWILCHQ9H900 591 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 CARS2Q9HA77 564 aaKnown RBP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 STARD5Q9NSY2 213 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 LMBRD1Q9NUN5 540 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ANO10Q9NW15 660 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 WDR70Q9NW82 654 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 TAS2R14Q9NYV8 317 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 PCSK1NQ9UHG2 260 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 MOSPD1Q9UJG1 213 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 HEMK1Q9Y5R4 338 aaPredicted RBP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 C9orf172C9J069 976 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 PSMD11O00231 422 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 TEX33O43247 280 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 B4GAT1O43505 415 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 HEXIM1O94992 359 aaKnown RBP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 CR2P20023 1033 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 CDK11BP21127 795 aaKnown RBP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 MIPP30301 263 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 VIPR1P32241 457 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 GPR3P46089 330 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 NFATC3Q12968 1075 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 SRSF6Q13247 344 aaKnown RBP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 TRA2AQ13595 282 aaKnown RBP eCLIP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 DPYSQ14117 519 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 CNGA3Q16281 694 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 PPP6R3Q5H9R7 873 aaPredicted RBP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 RALGPS1Q5JS13 557 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 PHF19Q5T6S3 580 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 ARHGAP36Q6ZRI8 547 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 CYP4V2Q6ZWL3 525 aaPredicted RBP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 TMPRSS9Q7Z410 1059 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 NRROSQ86YC3 692 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 SFTPA2Q8IWL1 248 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 PELI3Q8N2H9 469 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 ZDHHC1Q8WTX9 485 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 DTD2Q96FN9 168 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 NSMCE3Q96MG7 304 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 NUDCD1Q96RS6 583 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 FRMD8Q9BZ67 464 aaPredicted RBP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 SEMA6CQ9H3T2 930 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 SPATS2LQ9NUQ6 558 aaKnown RBP12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 FOXJ2Q9P0K8 574 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 PHTF1Q9UMS5 762 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 PCDHGA4Q9Y5G9 962 aa12.01□□□□□ -0.49
CBX3P4-202ENST00000540428 LRRK1Q38SD2 2015 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 RHPN2P1A8MT19 583 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 CPP00450 1065 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 FGF1P05230 155 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 CEACAM5P06731 702 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 IVLP07476 585 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 CYP2A6P11509 494 aaPredicted RBP12□□□□□ -0.49
CBX3P4-202ENST00000540428 GZMAP12544 262 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 ITGB6P18564 788 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 PCK1P35558 622 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 CSRP3P50461 194 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 MAPK10P53779 464 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 MAZP56270 477 aaKnown RBP12□□□□□ -0.49
CBX3P4-202ENST00000540428 CDK3Q00526 305 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 SLC10A7Q0GE19 358 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 SQSTM1Q13501 440 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 ZNF235Q14590 738 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 C16orf72Q14CZ0 275 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 NCAPHQ15003 741 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 DPYSL2Q16555 572 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 STX1AQ16623 288 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 SASS6Q6UVJ0 657 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 PRICKLE2Q7Z3G6 844 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 HEATR4Q86WZ0 1026 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 ZFAND4Q86XD8 727 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 BBS5Q8N3I7 341 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 EXTL1Q92935 676 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 DPYSL5Q9BPU6 564 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 MGME1Q9BQP7 344 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 CWC15Q9P013 229 aaKnown RBP12□□□□□ -0.49
CBX3P4-202ENST00000540428 TAAR2Q9P1P5 351 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 SLC17A4Q9Y2C5 497 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 PPIL1Q9Y3C6 166 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 PCDHGC4Q9Y5F7 938 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 PCDHGA3Q9Y5H0 932 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 SCINQ9Y6U3 715 aa12□□□□□ -0.49
CBX3P4-202ENST00000540428 A8MX80 341 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 TMCO5BA8MYB1 307 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 STMND1H3BQB6 276 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 H3BRJ5 948 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 ATMINO43313 823 aaPredicted RBP11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 LRCH4O75427 683 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 ECEL1O95672 775 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 PEX11BO96011 259 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 FUCA1P04066 466 aa11.99□□□□□ -0.49
CBX3P4-202ENST00000540428 ALDH4A1P30038 563 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms