RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CCDC117Q8IWD4 279 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 DNAAF3Q8N9W5 541 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 SIPA1Q96FS4 1042 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF419Q96HQ0 510 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 IL12RB2Q99665 862 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 LRRC40Q9H9A6 602 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PRSS16Q9NQE7 514 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 UBP1Q9NZI7 540 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 BFARQ9NZS9 450 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 KIAA1522Q9P206 1035 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 SLC17A7Q9P2U7 560 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 CNOT1A5YKK6 2376 aaKnown RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 TTC34A8MYJ7 566 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 NPC1O15118 1278 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 SNX3O60493 162 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 RHOQP17081 205 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 ITPKAP23677 461 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PAPOLAP51003 745 aaKnown RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 GTF2A1P52655 376 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 CORO7P57737 925 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 NIPAL4Q0D2K0 466 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 BMPR2Q13873 1038 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 RSPO4Q2I0M5 234 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PLA2G2CQ5R387 149 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 TIGD7Q6NT04 549 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 LPCAT2Q7L5N7 544 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 TFAP2DQ7Z6R9 452 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 UMODL1-AS1Q8N2C9 162 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PIGKQ92643 395 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 MTBPQ96DY7 904 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 LOXL4Q96JB6 756 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 ZYG11BQ9C0D3 744 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 C12orf65Q9H3J6 166 aaKnown RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 NOL6Q9H6R4 1146 aaKnown RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PPARGC1AQ9UBK2 798 aaKnown RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 RPS6KL1Q9Y6S9 549 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 ASPMQ8IZT6 3477 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 IGLV3-10A0A075B6K4 115 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 HMX2A2RU54 273 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 ID4P47928 161 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 SERPINB9P50453 376 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 TPMTP51580 245 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 NEK3P51956 506 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 ECT2LQ008S8 904 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 CAMK2GQ13555 558 aaPredicted RBP12□□□□□ -0.49
CLIP1-208ENST00000537004 ITIH4Q14624 930 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 SPANXN3Q5MJ09 141 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 NAPEPLDQ6IQ20 393 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 CES3Q6UWW8 571 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 RGS9BPQ6ZS82 235 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 MARK2Q7KZI7 788 aaKnown RBP12□□□□□ -0.49
CLIP1-208ENST00000537004 FAM124AQ86V42 546 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 LRRC49Q8IUZ0 686 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 SLC41A1Q8IVJ1 513 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 KLHDC8BQ8IXV7 354 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 SPOCK2Q92563 424 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 CDKL2Q92772 493 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 ALG14Q96F25 216 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 APOL2Q9BQE5 337 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 GLOD4Q9HC38 313 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 TMEM248Q9NWD8 314 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 ERVW-1Q9UQF0 538 aa12□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 PSMD3O43242 534 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 LRP3O75074 770 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 SIN3BO75182 1162 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF217O75362 1048 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 RFPL1O75677 317 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF806P0C7X5 589 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CNTFP26441 200 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 NPY2RP49146 381 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 NDST2P52849 883 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 DNAJC3Q13217 504 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF177Q13360 481 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 NAB1Q13506 487 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CERCAMQ5T4B2 595 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 RNF187Q5TA31 235 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 MROH9Q5TGP6 573 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 FAM47EQ6ZV65 393 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CYP2U1Q7Z449 544 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 LINC00523Q86TU6 105 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 OTUD6BQ8N6M0 293 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 OR2T3Q8NH03 318 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 SPATA22Q8NHS9 363 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 LRRC8CQ8TDW0 803 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CERS2Q96G23 380 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 TOE1Q96GM8 510 aaKnown RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 FCRL5Q96RD9 977 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 FEM1AQ9BSK4 669 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 PITPNM3Q9BZ71 974 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 FSCN3Q9NQT6 498 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 DONSONQ9NYP3 566 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 SLC17A6Q9P2U8 582 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 IPO11Q9UI26 975 aaKnown RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 AAR2Q9Y312 384 aaKnown RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 PCDHGA5Q9Y5G8 931 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 THADAQ6YHU6 1953 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 NUMA1Q14980 2115 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms