RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CARD9Q9H257 536 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 DNAH14Q0VDD8 3507 aa15.05■□□□□ 0
CPSF1-208ENST00000532560 MT-CYBP00156 380 aaPredicted RBP15.05■□□□□ -0
CPSF1-208ENST00000532560 PCCBP05166 539 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 ITGAVP06756 1048 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 NME1P15531 152 aaKnown RBP15.05■□□□□ -0
CPSF1-208ENST00000532560 KCNA4P22459 653 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 THOP1P52888 689 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 CDK18Q07002 472 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 INPP5AQ14642 412 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 PTPRRQ15256 657 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 QPCTQ16769 361 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 CRTC1Q6UUV9 634 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 HSD11B1LQ7Z5J1 315 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 GATAD2AQ86YP4 633 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 RAVER1Q8IY67 606 aaKnown RBP15.05■□□□□ -0
CPSF1-208ENST00000532560 SPATA22Q8NHS9 363 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 SETD7Q8WTS6 366 aaKnown RBP15.05■□□□□ -0
CPSF1-208ENST00000532560 CAMK1GQ96NX5 476 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 FCRL5Q96RD9 977 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 FAM118BQ9BPY3 351 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 GBA3Q9H227 469 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 FAM153AQ9UHL3 310 aa15.05■□□□□ -0
CPSF1-208ENST00000532560 COL5A1P20908 1838 aaPredicted RBP15.05■□□□□ -0
CPSF1-208ENST00000532560 PCNX2A6NKB5 2137 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 ANKRD66B4E2M5 251 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 PIAS2O75928 621 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 STK10O94804 968 aaKnown RBP15.04■□□□□ -0
CPSF1-208ENST00000532560 CSF2P04141 144 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 ETV3P41162 512 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 STC1P52823 247 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 KIAA1024LP59773 190 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 HNRNPKP61978 463 aaKnown RBP eCLIP15.04■□□□□ -0
CPSF1-208ENST00000532560 FOXK2Q01167 660 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 NFATC4Q14934 902 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 PCSK7Q16549 785 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 GLIPR1L2Q4G1C9 344 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 ITPRIPL1Q6GPH6 555 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 DARS2Q6PI48 645 aaKnown RBP15.04■□□□□ -0
CPSF1-208ENST00000532560 KDELC1Q6UW63 502 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 ZNF765Q7L2R6 523 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 PID1Q7Z2X4 250 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 TECPR1Q7Z6L1 1165 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 GLRX5Q86SX6 157 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 PLA2G15Q8NCC3 412 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 SMIM14Q96QK8 99 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 APOOQ9BUR5 198 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 MLPHQ9BV36 600 aaPredicted RBP15.04■□□□□ -0
CPSF1-208ENST00000532560 C10orf88Q9H8K7 445 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 DNAJC28Q9NX36 388 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 RSPH14Q9UHP6 348 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 BTBD3Q9Y2F9 522 aa15.04■□□□□ -0
CPSF1-208ENST00000532560 R3HDM2Q9Y2K5 976 aaKnown RBP15.04■□□□□ -0
CPSF1-208ENST00000532560 C1orf232A0A0U1RR37 186 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 TCRBV7S2A1N4TA0A589 114 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 H3BM21 787 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 KCNN4O15554 427 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 SDC3O75056 442 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 PMPCBO75439 489 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 NDST3O95803 873 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 HOXC4P09017 264 aaPredicted RBP15.03■□□□□ -0
CPSF1-208ENST00000532560 C1SP09871 688 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 TSHRP16473 764 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 TEAD1P28347 426 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 TRIM23P36406 574 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 PTSQ03393 145 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 DPTQ07507 201 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 BNIP3Q12983 259 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 EIF2B5Q13144 721 aaKnown RBP15.03■□□□□ -0
CPSF1-208ENST00000532560 MPP3Q13368 585 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 GALNT3Q14435 633 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 TRIP6Q15654 476 aaKnown RBP15.03■□□□□ -0
CPSF1-208ENST00000532560 CDKN3Q16667 212 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 DENND2CQ68D51 928 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 PNCKQ6P2M8 343 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 Q6ZVL8 140 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 SLC13A5Q86YT5 568 aaPredicted RBP15.03■□□□□ -0
CPSF1-208ENST00000532560 ATL2Q8NHH9 583 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 SLC35B2Q8TB61 432 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 RHBDD1Q8TEB9 315 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 OXNAD1Q96HP4 312 aaPredicted RBP15.03■□□□□ -0
CPSF1-208ENST00000532560 TBATAQ96M53 351 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 SPATA13Q96N96 652 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 CDC6Q99741 560 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 TLR10Q9BXR5 811 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 FRMD8P1Q9BZ68 369 aaPredicted RBP15.03■□□□□ -0
CPSF1-208ENST00000532560 WDR26Q9H7D7 661 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 USP29Q9HBJ7 922 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 UBP1Q9NZI7 540 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 OR1A2Q9Y585 309 aa15.03■□□□□ -0
CPSF1-208ENST00000532560 A0A0U1RQS6 177 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 LOC285095A0A1B0GVY8 99 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 MED19A0JLT2 244 aaPredicted RBP15.02■□□□□ -0
CPSF1-208ENST00000532560 CLDN7O95471 211 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 EPOP01588 193 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 ADRB1P08588 477 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 DGKAP23743 735 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 HTR1BP28222 390 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 WNT3AP56704 352 aa15.02■□□□□ -0
CPSF1-208ENST00000532560 SIM1P81133 766 aaPredicted RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms