RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ZBTB8BQ8NAP8 495 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 MSANTD4Q8NCY6 345 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 WIPF2Q8TF74 440 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 PIGKQ92643 395 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 TEKT1Q969V4 418 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 VOPP1Q96AW1 172 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 TMCO6Q96DC7 493 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 ELMOD3Q96FG2 381 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 SIPA1Q96FS4 1042 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 P2RY11Q96G91 374 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 TMEM68Q96MH6 324 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 GBP5Q96PP8 586 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 OR2A14Q96R47 310 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 FIZ1Q96SL8 496 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 SIN3AQ96ST3 1273 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 KIFC3Q9BVG8 833 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 MRPL1Q9BYD6 325 aaKnown RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 HRH4Q9H3N8 390 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 HIPK3Q9H422 1215 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 RWDD1Q9H446 243 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 PLEKHA4Q9H4M7 779 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 OPA3Q9H6K4 179 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 AAMDCQ9H7C9 122 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 XAB2Q9HCS7 855 aaKnown RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 PFDN4Q9NQP4 134 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 DONSONQ9NYP3 566 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 WDR35Q9P2L0 1181 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 RABL2AQ9UBK7 228 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 IPO11Q9UI26 975 aaKnown RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 PADI1Q9ULC6 663 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 CARD8Q9Y2G2 431 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 SNX5Q9Y5X3 404 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 FLT1P17948 1338 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 KIF16BQ96L93 1317 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 DISP3Q9P2K9 1392 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 MST1RQ04912 1400 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CYP2D7A0A087X1C5 515 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 TYW5A2RUC4 315 aaKnown RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 URADA6NGE7 173 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CBY3A6NI87 242 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 LRRC72A6NJI9 287 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 SMTNL1A8MU46 457 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 H0Y626 953 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ADAMDEC1O15204 470 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 MITFO75030 526 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 AVILO75366 819 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 PSMD10O75832 226 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 PCNAP12004 261 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ZNF182P17025 639 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 CPT2P23786 658 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 PON1P27169 355 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ATP5DP30049 168 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 HOXA7P31268 230 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 KIF5BP33176 963 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 SOX2P48431 317 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 UBASH3AP57075 661 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CLDN2P57739 230 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 C21orf58P58505 322 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 TFAP4Q01664 338 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ACSM2AQ08AH3 577 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 COX10Q12887 443 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CAMK2DQ13557 499 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 SNTB1Q13884 538 aaKnown RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 CXorf66Q5JRM2 361 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 COLEC12Q5KU26 742 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ACSM2BQ68CK6 577 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CEP85Q6P2H3 762 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 PLBD1Q6P4A8 553 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CTR9Q6PD62 1173 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 SHQ1Q6PI26 577 aaKnown RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 DCLRE1AQ6PJP8 1040 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 SLC2A7Q6PXP3 512 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CLEC17AQ6ZS10 378 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 LURAP1LQ8IV03 231 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CADM3Q8N126 398 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 MINDY1Q8N5J2 469 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 TEX9Q8N6V9 391 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 ARL14EPQ8N8R7 260 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 MCUQ8NE86 351 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 MNS1Q8NEH6 495 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 HASPINQ8TF76 798 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 DUSP19Q8WTR2 217 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 HDAC7Q8WUI4 952 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 NSMCE1Q8WV22 266 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 N4BP2L2Q92802 583 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 RAB3IPQ96QF0 476 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 FCRL5Q96RD9 977 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 PAFAH2Q99487 392 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 TUBB6Q9BUF5 446 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 CCDC106Q9BWC9 280 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 C1QTNF1Q9BXJ1 281 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 TEX13AQ9BXU3 409 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 MRPL9Q9BYD2 267 aaKnown RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 ANKRD2Q9GZV1 360 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 RPAP3Q9H6T3 665 aaPredicted RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 ZNF304Q9HCX3 659 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 BPIFA1Q9NP55 256 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 SETD4Q9NVD3 440 aa3.37□□□□□ -1.87
CD44-229ENST00000528672 TRMT1Q9NXH9 659 aaKnown RBP3.37□□□□□ -1.87
CD44-229ENST00000528672 PSD3Q9NYI0 1048 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms