RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZNF542PQ5EBM4 170 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 BRAT1Q6PJG6 821 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 PARS2Q7L3T8 475 aaKnown RBP10.19□□□□□ -0.78
VPS28-204ENST00000526054 ZC3H18Q86VM9 953 aaKnown RBP10.19□□□□□ -0.78
VPS28-204ENST00000526054 PARGQ86W56 976 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 DCP2Q8IU60 420 aaKnown RBP10.19□□□□□ -0.78
VPS28-204ENST00000526054 PGBD5Q8N414 524 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 ZNF548Q8NEK5 533 aaPredicted RBP10.19□□□□□ -0.78
VPS28-204ENST00000526054 ACTL9Q8TC94 416 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 HCAR2Q8TDS4 363 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 LRRN4Q8WUT4 740 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 FGF11Q92914 225 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 RAB7BQ96AH8 199 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 APOLD1Q96LR9 279 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 KLHL32Q96NJ5 620 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 DEPDC7Q96QD5 511 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 IL12RB2Q99665 862 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 SEMA3CQ99985 751 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 HERPUD2Q9BSE4 406 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 DUSP23Q9BVJ7 150 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 TLR10Q9BXR5 811 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 SLC17A9Q9BYT1 436 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 SUV39H2Q9H5I1 410 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 PRORYQ9H606 182 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 CAAP1Q9H8G2 361 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 GPR27Q9NS67 375 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 SEPT10Q9P0V9 454 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 SAE1Q9UBE0 346 aaPredicted RBP10.19□□□□□ -0.78
VPS28-204ENST00000526054 DKK3Q9UBP4 350 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 PCDHB1Q9Y5F3 818 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 FADS3Q9Y5Q0 445 aa10.19□□□□□ -0.78
VPS28-204ENST00000526054 GCN1Q92616 2671 aaKnown RBP10.19□□□□□ -0.78
VPS28-204ENST00000526054 PTPRQQ9UMZ3 2332 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 TSPAN11A1L157 253 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 POM121BA6NF01 834 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 USP27XA6NNY8 438 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 K7ESM1 405 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 NEMP1O14524 444 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 SCAMP1O15126 338 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 AP1G1O43747 822 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 OPA1O60313 960 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 SOCS5O75159 536 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 STK10O94804 968 aaKnown RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 PAK4O96013 591 aaPredicted RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 JCHAINP01591 159 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 GP1BAP07359 652 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 GIMD1P0DJR0 217 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 NME1P15531 152 aaKnown RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 NFKBIAP25963 317 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 RABIFP47224 123 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 DUSP3P51452 185 aaPredicted RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 SUOXP51687 545 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 PCBP4P57723 403 aaKnown RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 EIF3EP60228 445 aaKnown RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 ZBTB17Q13105 803 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 KLF1Q13351 362 aaPredicted RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 PDE1CQ14123 709 aaPredicted RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 FGL2Q14314 439 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 FZD2Q14332 565 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 ALG1LQ6GMV1 187 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 SLC13A5Q86YT5 568 aaPredicted RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 SLC35F6Q8N357 371 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 MAIP1Q8WWC4 291 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 HTR3CQ8WXA8 447 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 FEM1CQ96JP0 617 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 VAT1Q99536 393 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 FRMD8P1Q9BZ68 369 aaPredicted RBP10.18□□□□□ -0.78
VPS28-204ENST00000526054 USP29Q9HBJ7 922 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 ATP8A1Q9Y2Q0 1164 aa10.18□□□□□ -0.78
VPS28-204ENST00000526054 COL27A1Q8IZC6 1860 aaPredicted RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 LY6G6EA0A0G2JKS1 128 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 SPTY2D1-AS1A0A0U1RR47 76 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 FPGTO14772 594 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 ATXN7O15265 892 aaPredicted RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 RAD51BO15315 384 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 TSPAN6O43657 245 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 CSO75390 466 aaKnown RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 CSF2P04141 144 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 PRB1P04280 392 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 MPOP05164 745 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 RBP3P10745 1247 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 MYF5P13349 255 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 PTPN3P26045 913 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 ABL2P42684 1182 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 POLR2LP62875 67 aaKnown RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 GABREP78334 506 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 DSC2Q02487 901 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 TLE3Q04726 772 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 ELP6Q0PNE2 266 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 SGCGQ13326 291 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 TEX44Q53QW1 395 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 CDCP2Q5VXM1 449 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 ZCCHC8Q6NZY4 707 aaKnown RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 ERAP2Q6P179 960 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 DARS2Q6PI48 645 aaKnown RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 B4GALNT4Q76KP1 1039 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 TTC7BQ86TV6 843 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 CAMK1DQ8IU85 385 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 SPACA3Q8IXA5 215 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 FAM181AQ8N9Y4 354 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms