RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 NAGSQ8N159 534 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 PAF1Q8N7H5 531 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 CENPIQ92674 756 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 IGHV1OR21-1A0A087WYE8 117 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 CFAP69A5D8W1 941 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 PRR19A6NJB7 356 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 CAPN5O15484 640 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 CEACAM5P06731 702 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 PTPN9P43378 593 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 GPR3P46089 330 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 PARP15Q460N3 678 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 LACTB2Q53H82 288 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 SNAP47Q5SQN1 464 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 AFMIDQ63HM1 303 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 C16orf46Q6P387 395 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 TIPARPQ7Z3E1 657 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 SRLQ86TD4 932 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 ZNF761Q86XN6 746 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 TSEN2Q8NCE0 465 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 SLC30A5Q8TAD4 765 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 SLC20A1Q8WUM9 679 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 APOBEC4Q8WW27 367 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 NTAN1Q96AB6 310 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 C11orf70Q9BRQ4 267 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 ZMYND15Q9H091 742 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 PDFQ9HBH1 243 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 PLEKHM1Q9Y4G2 1056 aa20.33■□□□□ 0.85
SQSTM1-215ENST00000514093 MYO9AB2RTY4 2548 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 A8MU76 341 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 K7EM74 188 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 PDE2AO00408 941 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 MYCLP1P12525 358 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 SERPINA4P29622 427 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 POLD2P49005 469 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 PPM1FP49593 454 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 SCYL2Q6P3W7 929 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 DPPA4Q7L190 304 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 HEATR4Q86WZ0 1026 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 NLGN4XQ8N0W4 816 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 BMPERQ8N8U9 685 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 NLGN4YQ8NFZ3 816 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 KIAA1143Q96AT1 154 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 RTP4Q96DX8 246 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 TUBGCP5Q96RT8 1024 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 ATP13A3Q9H7F0 1226 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 KCNK4Q9NYG8 393 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 SUFUQ9UMX1 484 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 TP53TG5Q9Y2B4 290 aa20.32■□□□□ 0.84
SQSTM1-215ENST00000514093 TRBV23OR9-2A0A075B6M9 112 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 B4E171 279 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 KRT7P08729 469 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 MMP8P22894 467 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 RFC1P35251 1148 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 TSPAN7P41732 249 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 CTBSQ01459 385 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 MAN2A1Q16706 1144 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 KLHDC7AQ5VTJ3 777 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 DENND2CQ68D51 928 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 ATCAYQ86WG3 371 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 UMODL1-AS1Q8N2C9 162 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 EPS8L1Q8TE68 723 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 RNF31Q96EP0 1072 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 CELF6Q96J87 481 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 NSMCE3Q96MG7 304 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 SPRY4Q9C004 299 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 NDST4Q9H3R1 872 aa20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 TRNAU1APQ9NX07 287 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-215ENST00000514093 WASH4PA8MWX3 477 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 MAP4P27816 1152 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 CD97P48960 835 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 RAB15P59190 212 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 BCL2L1Q07817 233 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 KLRB1Q12918 225 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 SQSTM1Q13501 440 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 TMEM71Q6P5X7 295 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 KDELC2Q7Z4H8 507 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 STARD8Q92502 1023 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 ECHDC3Q96DC8 303 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 NAA15Q9BXJ9 866 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 LRRC19Q9H756 370 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 CATSPERBQ9H7T0 1116 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 APMAPQ9HDC9 416 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 PHPT1Q9NRX4 125 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 PLEKHB1Q9UF11 243 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 MRPS18BQ9Y676 258 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 ICE1Q9Y2F5 2266 aa20.3■□□□□ 0.84
SQSTM1-215ENST00000514093 PRAMEF11O60813 436 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 CYP1A1P04798 512 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 KRT3P12035 628 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 PRKCSHP14314 528 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 GPD1P21695 349 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 ADCY8P40145 1251 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 UQCRFS1P47985 274 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 SEPT6Q14141 434 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 VWA3BQ502W6 1294 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 HSP90AA4PQ58FG1 418 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 MIIPQ5JXC2 388 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 WDR59Q6PJI9 974 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 NUS1Q96E22 293 aa20.29■□□□□ 0.84
SQSTM1-215ENST00000514093 COQ10AQ96MF6 247 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms