RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 LRRC19Q9H756 370 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 MANSC1Q9H8J5 431 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 THG1LQ9NWX6 298 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 COMMD8Q9NX08 183 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 CD207Q9UJ71 328 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 MOSPD1Q9UJG1 213 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 PROCP04070 461 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 HLA-EP13747 358 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 VCLP18206 1134 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 RPL10P27635 214 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 PCSK6P29122 969 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 ARL4CP56559 192 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 RING1Q06587 406 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 ADAM15Q13444 863 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 OGFOD2Q6N063 350 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 KLHDC10Q6PID8 442 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 SFTPA1Q8IWL2 248 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 SCML4Q8N228 414 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC35B2Q8TB61 432 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 IRF7Q92985 503 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 GRAMD1AQ96CP6 724 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 SERPINB12Q96P63 405 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 SEMA3CQ99985 751 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 PLA2G2FQ9BZM2 168 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 HSFX1Q9UBD0 423 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 UBA2Q9UBT2 640 aaPredicted RBP8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 SLCO3A1Q9UIG8 710 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 CDH7Q9ULB5 785 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 NDRG2Q9UN36 371 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 NUMBLQ9Y6R0 609 aa8.71□□□□□ -1.01
LIMCH1-209ENST00000509277 WASH3PC4AMC7 463 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 GOLGA8TH3BQL2 631 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 CES2O00748 559 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 AIM2O14862 343 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 TPST1O60507 370 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 CLDN11O75508 207 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 OCM2P0CE71 109 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 OCMP0CE72 109 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 MAGP20916 626 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 PTGIRP43119 386 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 CHRNA4P43681 627 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 AQP5P55064 265 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 PLOD1Q02809 727 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 SCAPQ12770 1279 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 LMAN2Q12907 356 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 LSAMPQ13449 338 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 DHCR24Q15392 516 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 PARP6Q2NL67 630 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 MPPE1Q53F39 396 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 C6orf52Q5T4I8 152 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 LPCAT2Q7L5N7 544 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 GANCQ8TET4 914 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 SPHK2Q9NRA0 654 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 EURLQ9NYK6 297 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 DTNAQ9Y4J8 743 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 PCDHGC4Q9Y5F7 938 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 WDR87Q6ZQQ6 2873 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 AP3B1O00203 1094 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 HOXD12P35452 270 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 CDH15P55291 814 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 MESP2Q0VG99 397 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 EMC10Q5UCC4 262 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 NXNQ6DKJ4 435 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 XKR5Q6UX68 686 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 CHST9Q7L1S5 443 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 CLVS1Q8IUQ0 354 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 CPNE9Q8IYJ1 553 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 PARP8Q8N3A8 854 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 PYROXD1Q8WU10 500 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 C17orf50Q8WW18 174 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 FAM136AQ96C01 138 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 ASB16Q96NS5 453 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 SMIM14Q96QK8 99 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 FICDQ9BVA6 458 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 UBE2ZQ9H832 354 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 STX18Q9P2W9 335 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 SHOC2Q9UQ13 582 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 NEU2Q9Y3R4 380 aa8.71□□□□□ -1.02
LIMCH1-209ENST00000509277 GREB1Q4ZG55 1949 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 OTOL1A6NHN0 477 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PRR5-ARHGAP8B1AHC4 643 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CCL22O00626 93 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 NEMP1O14524 444 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ZBTB11O95625 1053 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 HLA-DQB2P05538 268 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 GSTT2P0CG29 244 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 GSTT2BP0CG30 244 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ADH5P11766 374 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 SAT1P21673 171 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PTPN3P26045 913 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 LTBRP36941 435 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 GRIA2P42262 883 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 HALP42357 657 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 AIF1P55008 147 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CDH4P55283 916 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 MRPS22P82650 360 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ARHGAP8P85298 464 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 FOLH1Q04609 750 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CD300CQ08708 224 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 GALNT3Q14435 633 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms