RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 MUC13Q9H3R2 512 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 C8orf4Q9NR00 106 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 PNPLA3Q9NST1 481 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF510Q9Y2H8 683 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF711Q9Y462 761 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 DLEC1Q9Y238 1755 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 GABRDO14764 452 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC22A3O75751 556 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 HDCP19113 662 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 TTKP33981 857 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC7A2P52569 658 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF252P-AS1Q0IIN9 211 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF549Q6P9A3 640 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ADHFE1Q8IWW8 467 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 CFAP52Q8N1V2 620 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ATAD1Q8NBU5 361 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 DNAJB14Q8TBM8 379 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 C2orf15Q8WU43 125 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ZDHHC6Q9H6R6 413 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 USP29Q9HBJ7 922 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 MAPRE3Q9UPY8 281 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 NPEPPSL1A6NEC2 478 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SNAP91O60641 907 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 RECQL5O94762 991 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ALOX15P16050 662 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SELPP16109 830 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 RRM2P31350 389 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 IRF9Q00978 393 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 DENND6AQ8IWF6 608 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 C1orf21Q9H246 121 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC17A6Q9P2U8 582 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 C1orf232A0A0U1RR37 186 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 F8W810 466 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 ULK1O75385 1050 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 SNAI1O95863 264 aaPredicted RBP10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 OGNP20774 298 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 HPCAL1P37235 193 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 CDH13P55290 713 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 GALNT2Q10471 571 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 REP15Q6BDI9 236 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 CAND1Q86VP6 1230 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 ATG16L2Q8NAA4 619 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 NPLOC4Q8TAT6 608 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 TWIST2Q8WVJ9 160 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 MYO19Q96H55 970 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 EBF2Q9HAK2 575 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 TMEM39AQ9NV64 488 aa10.77□□□□□ -0.68
LIMCH1-205ENST00000503057 ITM2AO43736 263 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 PKMP14618 531 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 IL5RAQ01344 420 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 MPP2Q14168 576 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 ACSBG2Q5FVE4 666 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 TPGS1Q6ZTW0 290 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 BBS7Q8IWZ6 715 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 MICU2Q8IYU8 434 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 OR4K2Q8NGD2 314 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 SELENOMQ8WWX9 145 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 UNC93B1Q9H1C4 597 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 PRKAG3Q9UGI9 489 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 SHANK3Q9BYB0 1731 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 MAN1A2O60476 641 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 ACSL4O60488 711 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 HERC3Q15034 1050 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 PPM1LQ5SGD2 360 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 SYT12Q8IV01 421 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 APOL4Q9BPW4 351 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 SENP6Q9GZR1 1112 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 ADPRHL2Q9NX46 363 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 MKS1Q9NXB0 559 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 AHSPQ9NZD4 102 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 HS6ST1O60243 411 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 STBD1O95210 358 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 ACTR3P61158 418 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 SMAD3P84022 425 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 GNA12Q03113 381 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 MAPKAPK3Q16644 382 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 VARS2Q5ST30 1063 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 ZNF618Q5T7W0 954 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 DNAJC14Q6Y2X3 702 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 HFE2Q6ZVN8 426 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 CYP4Z1Q86W10 505 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 CLVS1Q8IUQ0 354 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 ROPN1LQ96C74 230 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 TBATAQ96M53 351 aa10.77□□□□□ -0.69
LIMCH1-205ENST00000503057 IFRD1O00458 451 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 EPN2O95208 641 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 GOT2P00505 430 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 POLR2EP19388 210 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 CCNFP41002 786 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 HPCAP84074 193 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 MOGSQ13724 837 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 RALGPS1Q5JS13 557 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 ABRAXAS1Q6UWZ7 409 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 SVOPQ8N4V2 548 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 TMCO5AQ8N6Q1 288 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 SCAMP5Q8TAC9 235 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 BRSK1Q8TDC3 778 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 SUSD3Q96L08 255 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 BTBD9Q96Q07 612 aa10.76□□□□□ -0.69
LIMCH1-205ENST00000503057 HCRTO43612 131 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms