RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 LRRK2Q5S007 2527 aa9.14□□□□□ -0.95
CCDC171-209ENST00000498725 ICE1Q9Y2F5 2266 aa9.14□□□□□ -0.95
CCDC171-209ENST00000498725 CACNA1DQ01668 2161 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 IGHV1OR21-1A0A087WYE8 117 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 RASA4BC9J798 803 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 TNFRSF10CO14798 259 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 CAPN5O15484 640 aaPredicted RBP9.13□□□□□ -0.95
CCDC171-209ENST00000498725 RASA4O43374 803 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 CREB3O43889 395 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 FUCA1P04066 466 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 MAP4P27816 1152 aaKnown RBP9.13□□□□□ -0.95
CCDC171-209ENST00000498725 PPP1R2P41236 205 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 MAPK9P45984 424 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 RGRP47804 291 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 SUOXP51687 545 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 MARSP56192 900 aaKnown RBP9.13□□□□□ -0.95
CCDC171-209ENST00000498725 RALGDSQ12967 914 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 TRA2AQ13595 282 aaKnown RBP eCLIP9.13□□□□□ -0.95
CCDC171-209ENST00000498725 ERV3-1Q14264 604 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 TSR1Q2NL82 804 aaKnown RBP9.13□□□□□ -0.95
CCDC171-209ENST00000498725 CCDC14Q49A88 953 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 NAA35Q5VZE5 725 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 PNCKQ6P2M8 343 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 DOK6Q6PKX4 331 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 ASB18Q6ZVZ8 466 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 BNIPLQ7Z465 357 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 HEATR4Q86WZ0 1026 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 NAGSQ8N159 534 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 OR4D9Q8NGE8 314 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 JOSD2Q8TAC2 188 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 RTP4Q96DX8 246 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 SIX2Q9NPC8 291 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 UBA2Q9UBT2 640 aaPredicted RBP9.13□□□□□ -0.95
CCDC171-209ENST00000498725 KLHL3Q9UH77 587 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 SUFUQ9UMX1 484 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 ATP6V1DQ9Y5K8 247 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 ST14Q9Y5Y6 855 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 NBPF19A0A087WUL8 3843 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 NBASA2RRP1 2371 aa9.13□□□□□ -0.95
CCDC171-209ENST00000498725 TSPAN11A1L157 253 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 TTLL8A6PVC2 850 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 MKRN2OSH3BPM6 223 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 J3KR12 359 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 SEMA7AO75326 666 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 KATNA1O75449 491 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 STK17BO94768 372 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 MMEP08473 750 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 RNF224P0DH78 156 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 THRAP10827 490 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 GM2AP17900 193 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 EPHB2P29323 1055 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 SDC4P31431 198 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 SCNN1AP37088 669 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 ACTR1BP42025 376 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 STAT1P42224 750 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 NOP2P46087 812 aaKnown RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 MTIF2P46199 727 aaKnown RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 CD97P48960 835 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 BPIFB4P59827 614 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 ACTR1AP61163 376 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 CTBSQ01459 385 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 NRG1Q02297 640 aaPredicted RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 AGERQ15109 404 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 INO80DQ53TQ3 878 aaPredicted RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 CAPRIN2Q6IMN6 1127 aaKnown RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 SCYL2Q6P3W7 929 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 TMEM71Q6P5X7 295 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 BRAT1Q6PJG6 821 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 MARK2Q7KZI7 788 aaKnown RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 ZNF438Q7Z4V0 828 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 SRLQ86TD4 932 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 FAM71AQ8IYT1 594 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 MSANTD4Q8NCY6 345 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 SSC4DQ8WTU2 575 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 FAM172AQ8WUF8 416 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 CASKIN2Q8WXE0 1202 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 NCSTNQ92542 709 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 RNF166Q96A37 237 aaPredicted RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 NUS1Q96E22 293 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 CELF6Q96J87 481 aaKnown RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 PRDM8Q9NQV8 689 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 PHPT1Q9NRX4 125 aaPredicted RBP9.12□□□□□ -0.95
CCDC171-209ENST00000498725 KCNMB2Q9Y691 235 aa9.12□□□□□ -0.95
CCDC171-209ENST00000498725 MYO9AB2RTY4 2548 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 CXorf51AA0A1B0GTR3 108 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 TTC24A2A3L6 582 aaPredicted RBP9.11□□□□□ -0.95
CCDC171-209ENST00000498725 B4E171 279 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 PDE2AO00408 941 aaPredicted RBP9.11□□□□□ -0.95
CCDC171-209ENST00000498725 PES1O00541 588 aaKnown RBP9.11□□□□□ -0.95
CCDC171-209ENST00000498725 FGFR1OPO95684 399 aaKnown RBP9.11□□□□□ -0.95
CCDC171-209ENST00000498725 CEACAM5P06731 702 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 FURINP09958 794 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 MYCLP1P12525 358 aaPredicted RBP9.11□□□□□ -0.95
CCDC171-209ENST00000498725 CYP11B1P15538 503 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 F8A1P23610 371 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 SERPINA4P29622 427 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 CDH5P33151 784 aaPredicted RBP9.11□□□□□ -0.95
CCDC171-209ENST00000498725 TRIM23P36406 574 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 DLSTP36957 453 aa9.11□□□□□ -0.95
CCDC171-209ENST00000498725 ADCY8P40145 1251 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms