RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 FOXD4Q12950 439 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-212ENST00000496458 ZBTB17Q13105 803 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 CTF1Q16619 201 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 SLC45A4Q5BKX6 768 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 ZNF628Q5EBL2 1059 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 FAM122CQ6P4D5 195 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 QSOX2Q6ZRP7 698 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 TAOK1Q7L7X3 1001 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 SLC46A3Q7Z3Q1 461 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 SFR1Q86XK3 245 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 FIG4Q92562 907 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 INPP4AQ96PE3 977 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-212ENST00000496458 EVA1AQ9H8M9 152 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 LRRC4Q9HBW1 653 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 WASH6PQ9NQA3 447 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 TCF7L2Q9NQB0 619 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 DOCK7Q96N67 2140 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 TAF4O00268 1085 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 F9P00740 461 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 AMD1P17707 334 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 DGKAP23743 735 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 MT3P25713 68 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 ABCD1P33897 745 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 NEXNQ0ZGT2 675 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 PTP4A2Q12974 167 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 KRBA2Q6ZNG9 492 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 ZNF771Q7L3S4 317 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-212ENST00000496458 CADM4Q8NFZ8 388 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 KCNN2Q9H2S1 579 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 NDST4Q9H3R1 872 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 UBTD1Q9HAC8 227 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 EBF2Q9HAK2 575 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 SLC13A4Q9UKG4 626 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 GJD2Q9UKL4 321 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 CRYL1Q9Y2S2 319 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 CYP46A1Q9Y6A2 500 aa5.65□□□□□ -1.5
SF3B1-212ENST00000496458 A0A1W2PQM1 296 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 ZNF587BE7ETH6 402 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 GRID2O43424 1007 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 TNFSF14O43557 240 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 SEC31AO94979 1220 aaKnown RBP5.64□□□□□ -1.51
SF3B1-212ENST00000496458 MAOAP21397 527 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 CTCFP49711 727 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-212ENST00000496458 METAP2P50579 478 aaKnown RBP eCLIP5.64□□□□□ -1.51
SF3B1-212ENST00000496458 SEC61BP60468 96 aaKnown RBP5.64□□□□□ -1.51
SF3B1-212ENST00000496458 NAE1Q13564 534 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 ZNF329Q86UD4 541 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 SATL1Q86VE3 508 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 MUC20Q8N307 709 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-212ENST00000496458 CD101Q93033 1021 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 NODALQ96S42 347 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 SPRY4Q9C004 299 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 PPP1R3EQ9H7J1 279 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 HINT3Q9NQE9 182 aaKnown RBP5.64□□□□□ -1.51
SF3B1-212ENST00000496458 PDP2Q9P2J9 529 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 ERVK-11Q9UQG0 969 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 CAMK2AQ9UQM7 478 aa5.64□□□□□ -1.51
SF3B1-212ENST00000496458 TCF20Q9UGU0 1960 aaKnown RBP5.64□□□□□ -1.51
SF3B1-212ENST00000496458 TTC36A6NLP5 189 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 USP17L23D6RBM5 183 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 KRT86O43790 486 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 IGLV2-11P01706 119 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 DDIT3P35638 169 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 ACSM2AQ08AH3 577 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 KRT81Q14533 505 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 COL28A1Q2UY09 1125 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 RGMBQ6NW40 437 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 C9orf139Q6ZV77 190 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 HAPLN4Q86UW8 402 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 CHERPQ8IWX8 916 aaKnown RBP5.63□□□□□ -1.51
SF3B1-212ENST00000496458 ODF3L1Q8IXM7 274 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 SPATA6LQ8N4H0 392 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 NFKBIDQ8NI38 313 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 FAM110AQ9BQ89 295 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 UBA5Q9GZZ9 404 aa5.63□□□□□ -1.51
SF3B1-212ENST00000496458 PAIP1Q9H074 479 aaKnown RBP5.63□□□□□ -1.51
SF3B1-212ENST00000496458 AAR2Q9Y312 384 aaKnown RBP5.63□□□□□ -1.51
SF3B1-212ENST00000496458 LRRC53A6NM62 1247 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 BMPR1BO00238 502 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 XPNPEP2O43895 674 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 UMODP07911 640 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 HOXB5P09067 269 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 DDX5P17844 614 aaKnown RBP5.62□□□□□ -1.51
SF3B1-212ENST00000496458 CPOXP36551 454 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 ARL1P40616 181 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-212ENST00000496458 CLCNKAP51800 687 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 ZNF132P52740 706 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 RAD23BP54727 409 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 SLC20A2Q08357 652 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 ALG11Q2TAA5 492 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 METTL2BQ6P1Q9 378 aaKnown RBP5.62□□□□□ -1.51
SF3B1-212ENST00000496458 KCTD18Q6PI47 426 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-212ENST00000496458 USP43Q70EL4 1123 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 KCNH5Q8NCM2 988 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 OR2AK2Q8NG84 335 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 PPM1EQ8WY54 764 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 SAAL1Q96ER3 474 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 METTL2AQ96IZ6 378 aaKnown RBP5.62□□□□□ -1.51
SF3B1-212ENST00000496458 FEM1CQ96JP0 617 aa5.62□□□□□ -1.51
SF3B1-212ENST00000496458 SLC41A2Q96JW4 573 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms