RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 PRICKLE1Q96MT3 831 aaPredicted RBP13.81□□□□□ -0.2
VCP-207ENST00000493886 GBP5Q96PP8 586 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 SPON2Q9BUD6 331 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 DRC3Q9H069 523 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 ILKAPQ9H0C8 392 aaPredicted RBP13.81□□□□□ -0.2
VCP-207ENST00000493886 MFSD1Q9H3U5 465 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 WDR55Q9H6Y2 383 aaPredicted RBP13.81□□□□□ -0.2
VCP-207ENST00000493886 GKN1Q9NS71 199 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 SAGE1Q9NXZ1 904 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 GALNT8Q9NY28 637 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 DLX3O60479 287 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 STC2O76061 302 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 SOD2P04179 222 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 FGF1P05230 155 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 CHRNGP07510 517 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 CORO1AP31146 461 aaKnown RBP13.81□□□□□ -0.2
VCP-207ENST00000493886 TRIP10Q15642 601 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 CCDC92Q53HC0 331 aaPredicted RBP13.81□□□□□ -0.2
VCP-207ENST00000493886 PPM1LQ5SGD2 360 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 ALG1LQ6GMV1 187 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 BBS5Q8N3I7 341 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 RNF148Q8N7C7 305 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 PNPLA1Q8N8W4 532 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 MARK4Q96L34 752 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 OR52B2Q96RD2 323 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 OLFM1Q99784 485 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 PREBQ9HCU5 417 aa13.81□□□□□ -0.2
VCP-207ENST00000493886 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.81□□□□□ -0.2
VCP-207ENST00000493886 AIM2O14862 343 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 BUD23O43709 281 aaKnown RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 CLDN11O75508 207 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 EPOP01588 193 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 SERPINF2P08697 491 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 ITGAXP20702 1163 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 NAGLUP54802 743 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 DMPKQ09013 629 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 TBL3Q12788 808 aaKnown RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 TAF12Q16514 161 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 CNKSR3Q6P9H4 555 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 EPGNQ6UW88 154 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 GALNT7Q86SF2 657 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 BLOC1S5Q8TDH9 187 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 HEXDCQ8WVB3 486 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 MYRFLQ96LU7 910 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 MGME1Q9BQP7 344 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 MRPL46Q9H2W6 279 aaKnown RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 HSFX1Q9UBD0 423 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 SEPT3Q9UH03 358 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 YIPF1Q9Y548 306 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 ETS2P15036 469 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 RAG1P15918 1043 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 MPSTP25325 297 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 ALDH1A3P47895 512 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 SGSHP51688 502 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 OXCT1P55809 520 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 PLD1Q13393 1074 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 BTG3Q14201 252 aaPredicted RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 GALNT3Q14435 633 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 GRAMD1BQ3KR37 738 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 TPGS2Q68CL5 300 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 MAMSTRQ6ZN01 415 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 TOX2Q96NM4 488 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 MRPL57Q9BQC6 102 aaKnown RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 RNF38Q9H0F5 515 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 RHBDL2Q9NX52 303 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.8□□□□□ -0.22e-7■■□□□ 13.7
VCP-207ENST00000493886 UBA2Q9UBT2 640 aaPredicted RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 POMPQ9Y244 141 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 RAP2CQ9Y3L5 183 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 OR51F1A6NGY5 319 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 IRF1P10914 325 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 GLDCP23378 1020 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 KPNA2P52292 529 aaKnown RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 CSHL1Q14406 222 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 ARL13AQ5H913 290 aaPredicted RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 TMC7Q7Z402 723 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 LDB1Q86U70 411 aaPredicted RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 GDPD5Q8WTR4 605 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 TBATAQ96M53 351 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 C1orf21Q9H246 121 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 IGSF5Q9NSI5 407 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 MARCH4Q9P2E8 410 aaPredicted RBP13.8□□□□□ -0.2
VCP-207ENST00000493886 ARL5AQ9Y689 179 aa13.8□□□□□ -0.2
VCP-207ENST00000493886 COL4A6Q14031 1691 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 KDELR3O43731 214 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 PIGNO95427 931 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 EPHA3P29320 983 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 ACVR1Q04771 509 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 HECTD2Q5U5R9 776 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 VWCEQ96DN2 955 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 TSPAN17Q96FV3 270 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 TMEM169Q96HH4 297 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 PSKH2Q96QS6 385 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 CINPQ9BW66 212 aaPredicted RBP13.79□□□□□ -0.2
VCP-207ENST00000493886 OCEL1Q9H607 264 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.79□□□□□ -0.2
VCP-207ENST00000493886 ILVBLA1L0T0 632 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 C2orf78A6NCI8 922 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 S1PR4O95977 384 aa13.79□□□□□ -0.2
VCP-207ENST00000493886 RHOCP08134 193 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms