RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ATG4AQ8WYN0 398 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DTD2Q96FN9 168 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 OXNAD1Q96HP4 312 aaPredicted RBP16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TMEM121Q9BTD3 319 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 WDR87Q6ZQQ6 2873 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 C1orf232A0A0U1RR37 186 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SPTY2D1-AS1A0A0U1RR47 76 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 C5orf60A6NFR6 353 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 USP27XA6NNY8 438 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FLRT2O43155 660 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CEP104O60308 925 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PCDHGA12O60330 932 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ANXA9O76027 345 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CSRP1P21291 193 aaKnown RBP16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PSMB4P28070 264 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 EPHA8P29322 1005 aaPredicted RBP16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ETV3P41162 512 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 STC1P52823 247 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 THOP1P52888 689 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PTSQ03393 145 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PTK2BQ14289 1009 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FZD2Q14332 565 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PRPSAP1Q14558 356 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 INPP5AQ14642 412 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TPRG1LQ5T0D9 272 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ESRP1Q6NXG1 681 aaKnown RBP16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MACC1Q6ZN28 852 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DGLUCYQ7Z3D6 616 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PARGQ86W56 976 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FAM71DQ8N9W8 422 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PLA2G15Q8NCC3 412 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 IPMKQ8NFU5 416 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MAIP1Q8WWC4 291 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 C1orf54Q8WWF1 131 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MRGPRX2Q96LB1 330 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PPP1R2P1Q96PQ5 205 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 APOOQ9BUR5 198 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SLC32A1Q9H598 525 aa16.28■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LAMA1P25391 3075 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DMXL1Q9Y485 3027 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LOC285095A0A1B0GVY8 99 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SH3BP5O60239 455 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CLDN7O95471 211 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 EPOP01588 193 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FGGP02679 453 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GDF10P55107 478 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SIX1Q15475 284 aaPredicted RBP16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 OASLQ15646 514 aaKnown RBP16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CDKN3Q16667 212 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 INAVAQ3KP66 663 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PNCKQ6P2M8 343 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DBX2Q6ZNG2 339 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ARHGEF18Q6ZSZ5 1173 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 Q6ZVL8 140 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TECPR1Q7Z6L1 1165 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 RAVER1Q8IY67 606 aaKnown RBP16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DEFB124Q8NES8 71 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CCHCR1Q8TD31 782 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SETD7Q8WTS6 366 aaKnown RBP16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GORASP1Q9BQQ3 440 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FSD1LQ9BXM9 530 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MAGEE1Q9HCI5 957 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DNAJC28Q9NX36 388 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ZKSCAN5Q9Y2L8 839 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 AAR2Q9Y312 384 aaKnown RBP16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 OR1A2Q9Y585 309 aa16.27■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GCATO75600 419 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KCNK5O95279 499 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ATP1A1P05023 1023 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ITGAVP06756 1048 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ATXN1LP0C7T5 689 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PIRTP0C851 137 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TSHRP16473 764 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HLA-DPA1P20036 260 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KCNA4P22459 653 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GRK6P43250 576 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 NOVA1P51513 510 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 BNIP3Q12983 259 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 EIF2B5Q13144 721 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 NFATC4Q14934 902 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SLC1A5Q15758 541 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 LONRF2Q1L5Z9 754 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SIRPB2Q5JXA9 342 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PSAPL1Q6NUJ1 521 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RFLNAQ6ZTI6 216 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ZNF765Q7L2R6 523 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 LYSMD3Q7Z3D4 306 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GATAD2AQ86YP4 633 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 NRSN1Q8IZ57 195 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PELI3Q8N2H9 469 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SLC25A41Q8N5S1 370 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SAP25Q8TEE9 199 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RTP4Q96DX8 246 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PBKQ96KB5 322 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CAMK1GQ96NX5 476 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SRPK1Q96SB4 655 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FICDQ9BVA6 458 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PKD2L2Q9NZM6 624 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ZNF711Q9Y462 761 aa16.26■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms