RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 MAPK3P27361 379 aaPredicted RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 EEF1DP29692 281 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PRKAR1BP31321 381 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 UQCRC1P31930 480 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CCKARP32238 428 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 KRT2P35908 639 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TCF7P36402 384 aaPredicted RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 KCNJ1P48048 391 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CDK7P50613 346 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 RRP1P56182 461 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 RPL15P61313 204 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 SUMO2P61956 95 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 OLR1P78380 273 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 RPA4Q13156 261 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ITGA7Q13683 1181 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 SNTB1Q13884 538 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ZNF268Q14587 947 aaPredicted RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 IL11RAQ14626 422 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TYSND1Q2T9J0 566 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ALG11Q2TAA5 492 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 C9orf152Q5JTZ5 239 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PXDC1Q5TGL8 231 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ANKRD40Q6AI12 368 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 AWAT2Q6E213 333 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 GRHL2Q6ISB3 625 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 DENND1BQ6P3S1 775 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CLEC9AQ6UXN8 241 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ZNF813Q6ZN06 617 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM83HQ6ZRV2 1179 aaPredicted RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 MARK2Q7KZI7 788 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TECPR1Q7Z6L1 1165 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 DNAAF5Q86Y56 855 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CNTN4Q8IWV2 1026 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 SYCP3Q8IZU3 236 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PTGR2Q8N8N7 351 aaPredicted RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CEP76Q8TAP6 659 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PRPF31Q8WWY3 499 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 NPIPB3Q92617 1050 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ARHGEF2Q92974 986 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CTHRC1Q96CG8 243 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TMCO6Q96DC7 493 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 GBP5Q96PP8 586 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 FYTTD1Q96QD9 318 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 INTS14Q96SY0 518 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PKP4Q99569 1192 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM118BQ9BPY3 351 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TRIM7Q9C029 511 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TNMDQ9H2S6 317 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 MAGEE1Q9HCI5 957 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 P4HTMQ9NXG6 502 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 DDX43Q9NXZ2 648 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 MTMR4Q9NYA4 1195 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CACNG4Q9UBN1 327 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 FBXL17Q9UF56 701 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 LAMP5Q9UJQ1 280 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 RIMKLBQ9ULI2 386 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 USP22Q9UPT9 525 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 SLC27A6Q9Y2P4 619 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PAXBP1Q9Y5B6 917 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 MYOM3Q5VTT5 1437 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CAMSAP2Q08AD1 1489 aa3.28□□□□□ -1.89
DEPDC1-204ENST00000489862 GXYLT2A0PJZ3 443 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 GAGE10A6NGK3 116 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 DSCR3O14972 297 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 BCAT2O15382 392 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CD3EAPO15446 510 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ASAP2O43150 1006 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 PAPSS1O43252 624 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 SPRY2O43597 315 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ZBTB14O43829 449 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 HNRNPCL1O60812 293 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 GUCY1B2O75343 617 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 LARGE1O95461 756 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 DDAH2O95865 285 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 IFNB1P01574 187 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CCDC175P0C221 793 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 APEHP13798 732 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 ARSAP15289 507 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 HLA-DPA1P20036 260 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 DRD1P21728 446 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 IL4RP24394 825 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 PTPN3P26045 913 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 HOXD9P28356 352 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 PBLDP30039 288 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 HOXA11P31270 313 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 DIO1P49895 249 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 GPC3P51654 580 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TKTL1P51854 596 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 MRPL12P52815 198 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 MFAP4P55083 255 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 SLC26A5P58743 744 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 MTAPQ13126 283 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CBX3Q13185 183 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TUBB2AQ13885 445 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TRIM29Q14134 588 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 FRG1Q14331 258 aaKnown RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 CSHL1Q14406 222 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 TAF7Q15545 349 aaPredicted RBP3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 MEP1BQ16820 701 aa3.27□□□□□ -1.89
DEPDC1-204ENST00000489862 INSCQ1MX18 579 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms