RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	NEBL	O76041	1014 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	FTCD	O95954	541 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	SRPRA	P08240	638 aa	Known RBP	8.84	□□□□□ -0.99
USP4-213	ENST00000488520	CTNNA2	P26232	953 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	DRD3	P35462	400 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	MAPKAPK2	P49137	400 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	DNA2	P51530	1060 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	TMPRSS3	P57727	454 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	GABRE	P78334	506 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	SLC25A11	Q02978	314 aa	Known RBP	8.84	□□□□□ -0.99
USP4-213	ENST00000488520	SULT2A1	Q06520	285 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	STAT4	Q14765	748 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	POLD3	Q15054	466 aa	Predicted RBP	8.84	□□□□□ -0.99
USP4-213	ENST00000488520	DPYSL2	Q16555	572 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	CA9	Q16790	459 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	C5orf22	Q49AR2	442 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	ACCSL	Q4AC99	568 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	ANKRD20A8P	Q5CZ79	823 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	SEL1L2	Q5TEA6	688 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	FAM72A	Q5TYM5	149 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	BROX	Q5VW32	411 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	KAZN	Q674X7	775 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	FAM72D	Q6L9T8	149 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	TMCO3	Q6UWJ1	677 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	ZNF783	Q6ZMS7	281 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	RFX8	Q6ZV50	586 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	TFAP2D	Q7Z6R9	452 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	NT5DC3	Q86UY8	548 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	FAM72B	Q86X60	149 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	KATNAL2	Q8IYT4	538 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	SLC25A45	Q8N413	288 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	FAM181A	Q8N9Y4	354 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	ZNF248	Q8NDW4	579 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	EXD1	Q8NHP7	514 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	NSMCE1	Q8WV22	266 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	KLHDC7B	Q96G42	594 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	PEBP4	Q96S96	227 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	COL12A1	Q99715	3063 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	FERMT1	Q9BQL6	677 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	MAGEB5	Q9BZ81	275 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	PCDH18	Q9HCL0	1135 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	ANLN	Q9NQW6	1124 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	UCKL1	Q9NWZ5	548 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	CWC15	Q9P013	229 aa	Known RBP	8.84	□□□□□ -0.99
USP4-213	ENST00000488520	VPS28	Q9UK41	221 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	SARDH	Q9UL12	918 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	IGLV3-10	A0A075B6K4	115 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520		A0A0U1RQJ8	604 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	ILVBL	A1L0T0	632 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	C10orf142	B7Z368	130 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	APOL1	O14791	398 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	KLK10	O43240	276 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	MAGEC1	O60732	1142 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	RAMP2	O60895	175 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	USP12	O75317	370 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	CNTN5	O94779	1100 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	TJP3	O95049	919 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	TUBB4A	P04350	444 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	ITGB2	P05107	769 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	TCF4	P15884	667 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	ERCC2	P18074	760 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	DGKA	P23743	735 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	CTNNA1	P35221	906 aa	Known RBP	8.83	□□□□□ -1
USP4-213	ENST00000488520	NDST2	P52849	883 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	YBEY	P58557	167 aa	Predicted RBP	8.83	□□□□□ -1
USP4-213	ENST00000488520	E2F1	Q01094	437 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	ALF	Q53S48	1182 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	TFDP3	Q5H9I0	405 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	MEI1	Q5TIA1	1274 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	TXNRD3NB	Q6F5E7	133 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	RETSAT	Q6NUM9	610 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	CAPN12	Q6ZSI9	719 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	CIR1	Q86X95	450 aa	Predicted RBP	8.83	□□□□□ -1
USP4-213	ENST00000488520	LRRC57	Q8N9N7	239 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	MAIP1	Q8WWC4	291 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	RAPGEF5	Q92565	580 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	ZNF578	Q96N58	590 aa	Predicted RBP	8.83	□□□□□ -1
USP4-213	ENST00000488520	CSPG4P5	Q96PW8	444 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	RNF157	Q96PX1	679 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	ZNF670	Q9BS34	389 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	MAGEH1	Q9H213	219 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	GOLPH3	Q9H4A6	298 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	FZD3	Q9NPG1	666 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	KLHL11	Q9NVR0	708 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	HAUS2	Q9NVX0	235 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	TMEM248	Q9NWD8	314 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	DNAJB12	Q9NXW2	375 aa	Known RBP	8.83	□□□□□ -1
USP4-213	ENST00000488520	SLC25A13	Q9UJS0	675 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	TBC1D30	Q9Y2I9	924 aa		8.83	□□□□□ -1
USP4-213	ENST00000488520	ZFC3H1	O60293	1989 aa	Known RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	CTAGE9	A4FU28	777 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	CAPN8	A6NHC0	703 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	WASH4P	A8MWX3	477 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	DFFA	O00273	331 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	SLC31A1	O15431	190 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	PLRG1	O43660	514 aa	Known RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	CS	O75390	466 aa	Known RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	MAP3K6	O95382	1288 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	THEGL	P0DJG4	465 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	PRLR	P16471	622 aa		8.82	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms