RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 FBXO9Q9UK97 447 aaPredicted RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 ARHGEF11O15085 1522 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 EHBP1L1Q8N3D4 1523 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 LRRIQ1Q96JM4 1722 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 CCDC18Q5T9S5 1454 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 ATXN2Q99700 1313 aaKnown RBP6.01□□□□□ -1.45
USP40-213ENST00000483216 RIMBP3CA6NJZ7 1639 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 RIMBP3BA6NNM3 1639 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 RIMBP3Q9UFD9 1639 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 TMEM202A6NGA9 273 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 SEC31AO94979 1220 aaKnown RBP6.01□□□□□ -1.45
USP40-213ENST00000483216 UBL4AP11441 157 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 DDX5P17844 614 aaKnown RBP6.01□□□□□ -1.45
USP40-213ENST00000483216 SSTR2P30874 369 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 ELF1P32519 619 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 STX2P32856 288 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 MYBPHQ13203 477 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 AMZ1Q400G9 498 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 MMEL1Q495T6 779 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 KLHL22Q53GT1 634 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 C9orf57Q5W0N0 161 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 CCDC70Q6NSX1 233 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 PRSS57Q6UWY2 283 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 B3GNT6Q6ZMB0 384 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 BHLHA9Q7RTU4 235 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 R3HCC1LQ7Z5L2 792 aaKnown RBP6.01□□□□□ -1.45
USP40-213ENST00000483216 LMO3Q8TAP4 145 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 SCMH1Q96GD3 660 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 FAM110AQ9BQ89 295 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 TKTL2Q9H0I9 626 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 UNC45AQ9H3U1 944 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 GAREM1Q9H706 876 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 SLC9A2Q9UBY0 812 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 MTUS2Q5JR59 1369 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 KTN1Q86UP2 1357 aaKnown RBP6.01□□□□□ -1.45
USP40-213ENST00000483216 RAB3GAP2Q9H2M9 1393 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 GRIN2AQ12879 1464 aa6.01□□□□□ -1.45
USP40-213ENST00000483216 FGD6Q6ZV73 1430 aa6□□□□□ -1.45
USP40-213ENST00000483216 UGGT2Q9NYU1 1516 aa6□□□□□ -1.45
USP40-213ENST00000483216 HECW1Q76N89 1606 aa6□□□□□ -1.45
USP40-213ENST00000483216 CHD1O14646 1710 aa6□□□□□ -1.45
USP40-213ENST00000483216 SUPT6HQ7KZ85 1726 aaKnown RBP6□□□□□ -1.45
USP40-213ENST00000483216 A0A1W2PPH5 198 aa6□□□□□ -1.45
USP40-213ENST00000483216 hDV102S1A0JD36 115 aa6□□□□□ -1.45
USP40-213ENST00000483216 NDUFS7O75251 213 aa6□□□□□ -1.45
USP40-213ENST00000483216 HARS2P49590 506 aaKnown RBP6□□□□□ -1.45
USP40-213ENST00000483216 DDR1Q08345 913 aa6□□□□□ -1.45
USP40-213ENST00000483216 C2orf68Q2NKX9 166 aa6□□□□□ -1.45
USP40-213ENST00000483216 SETMARQ53H47 684 aaPredicted RBP6□□□□□ -1.45
USP40-213ENST00000483216 MTBPQ96DY7 904 aa6□□□□□ -1.45
USP40-213ENST00000483216 SLC41A2Q96JW4 573 aa6□□□□□ -1.45
USP40-213ENST00000483216 SLC26A6Q9BXS9 759 aa6□□□□□ -1.45
USP40-213ENST00000483216 DDX31Q9H8H2 851 aaKnown RBP6□□□□□ -1.45
USP40-213ENST00000483216 ASAH2Q9NR71 780 aa6□□□□□ -1.45
USP40-213ENST00000483216 PCDHB16Q9NRJ7 776 aa6□□□□□ -1.45
USP40-213ENST00000483216 RCOR1Q9UKL0 485 aa6□□□□□ -1.45
USP40-213ENST00000483216 INTS6Q9UL03 887 aaKnown RBP6□□□□□ -1.45
USP40-213ENST00000483216 ISY1Q9ULR0 285 aaKnown RBP6□□□□□ -1.45
USP40-213ENST00000483216 PCDHGB1Q9Y5G3 927 aa6□□□□□ -1.45
USP40-213ENST00000483216 NUP160Q12769 1436 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 MAOAP21397 527 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 DLG1Q12959 904 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 FGFBP1Q14512 234 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 CALCRLQ16602 461 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 IZUMO4Q1ZYL8 232 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 CDC73Q6P1J9 531 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 RHBDF2Q6PJF5 856 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 CERS3Q8IU89 383 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 WDR63Q8IWG1 891 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 LILRB1Q8NHL6 650 aaPredicted RBP5.99□□□□□ -1.45
USP40-213ENST00000483216 METTL6Q8TCB7 284 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 CREB3L4Q8TEY5 395 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 DUX5Q96PT3 197 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 OR1F2PQ96R84 312 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 HAUS8Q9BT25 410 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 PDCL3Q9H2J4 239 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 C17orf75Q9HAS0 396 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 SLC6A13Q9NSD5 602 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 HAO1Q9UJM8 370 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 AAR2Q9Y312 384 aaKnown RBP5.99□□□□□ -1.45
USP40-213ENST00000483216 SNX9Q9Y5X1 595 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 MAPKBP1O60336 1514 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 CLASP1Q7Z460 1538 aa5.99□□□□□ -1.45
USP40-213ENST00000483216 NCOA2Q15596 1464 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 NPIPB15A6NHN6 443 aaPredicted RBP5.98□□□□□ -1.45
USP40-213ENST00000483216 SEC14L2O76054 403 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 TMEM63AO94886 807 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 SRCP12931 536 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 KRT9P35527 623 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 METAP2P50579 478 aaKnown RBP eCLIP5.98□□□□□ -1.45
USP40-213ENST00000483216 RPL7AP62424 266 aaKnown RBP5.98□□□□□ -1.45
USP40-213ENST00000483216 POU5F1BQ06416 359 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 NAE1Q13564 534 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 SLC39A14Q15043 492 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 SF3B4Q15427 424 aaKnown RBP eCLIP5.98□□□□□ -1.45
USP40-213ENST00000483216 OASLQ15646 514 aaKnown RBP5.98□□□□□ -1.45
USP40-213ENST00000483216 KRT24Q2M2I5 525 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 ALG11Q2TAA5 492 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 USP41Q3LFD5 358 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 ATP13A5Q4VNC0 1218 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms