RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 TBKBP1A7MCY6 615 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 SMNDC1O75940 238 aaKnown RBP eCLIP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 HMGA1P17096 107 aaKnown RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 PGGT1BP53609 377 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 PTK2BQ14289 1009 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 SQLEQ14534 574 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 AFTPHQ6ULP2 937 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 SDCCAG8Q86SQ7 713 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 DHDDSQ86SQ9 333 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 CUZD1Q86UP6 607 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 OR6P1Q8NGX9 317 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 SARDHQ9UL12 918 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 MAFFQ9ULX9 164 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 VPS9D1Q9Y2B5 631 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 COPG1Q9Y678 874 aaKnown RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 A0A1B0GVM2 712 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 TCAF2A6NFQ2 919 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 INSIG1O15503 277 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 PEX1O43933 1283 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 FGF4P08620 206 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 OXCT1P55809 520 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 HERVK_113P63132 956 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 TLE2Q04725 743 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 TMEM173Q86WV6 379 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 SNX32Q86XE0 403 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 CCNYL1Q8N7R7 359 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 DTX3LQ8TDB6 740 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 GIPC2Q8TF65 315 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 DNAJC1Q96KC8 554 aaKnown RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 TBATAQ96M53 351 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 CINPQ9BW66 212 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 ERVK-6Q9BXR3 956 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 CCDC162PA2VCL2 907 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 F11P03951 625 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 SESN3P58005 492 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 DSG1Q02413 1049 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 PIGGQ5H8A4 983 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 DSELQ8IZU8 1212 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 NR1H4Q96RI1 486 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 CYP2S1Q96SQ9 504 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 KLF16Q9BXK1 252 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 TDRD1Q9BXT4 1180 aaKnown RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 OSBPL1AQ9BXW6 950 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 EFCAB1Q9HAE3 211 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 POLR3BQ9NW08 1133 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-212ENST00000477970 PPM1HQ9ULR3 514 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 TMCO1Q9UM00 188 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 ATP11BQ9Y2G3 1177 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 PDE4DIPQ5VU43 2346 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 SCN5AQ14524 2016 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 ANAPC1Q9H1A4 1944 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF106Q9H2Y7 1883 aaKnown RBP12.21□□□□□ -0.45
PTPRF-212ENST00000477970 COCHO43405 550 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 SMIM24O75264 130 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 JUNP05412 331 aaKnown RBP12.21□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF37AP17032 561 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-212ENST00000477970 KCNA5P22460 613 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 KLC1Q07866 573 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 PRSS55Q6UWB4 352 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-212ENST00000477970 BNC2Q6ZN30 1099 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-212ENST00000477970 SPATA6LQ8N4H0 392 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 CDKN2AIPNLQ96HQ2 116 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 SYTL2Q9HCH5 934 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 MRPL40Q9NQ50 206 aaKnown RBP12.21□□□□□ -0.45
PTPRF-212ENST00000477970 KCTD3Q9Y597 815 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 ARL5AQ9Y689 179 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 COMMD10Q9Y6G5 202 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 OBSL1O75147 1896 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 A0A0D9SEW6 157 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 LOC100653049A0A140TA62 436 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 CARNS1A5YM72 827 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 NEMP1O14524 444 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 KRT34O76011 436 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 STC2O76061 302 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF423Q2M1K9 1284 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 HACD2Q6Y1H2 254 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 AGR3Q8TD06 166 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 C1QTNF3Q9BXJ4 246 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 DERL2Q9GZP9 239 aa12.21□□□□□ -0.45
PTPRF-212ENST00000477970 MRPL42Q9Y6G3 142 aaKnown RBP12.21□□□□□ -0.45
PTPRF-212ENST00000477970 H7C0S8 307 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 MRPL19P49406 292 aaKnown RBP12.21□□□□□ -0.46
PTPRF-212ENST00000477970 NUDT2P50583 147 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 ATN1P54259 1190 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-212ENST00000477970 ATP6V0D1P61421 351 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 CDC16Q13042 620 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 SEMA3AQ14563 771 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 CYTH1Q15438 398 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 PDCD2Q16342 344 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-212ENST00000477970 ADGRF1Q5T601 910 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 GPR158Q5T848 1215 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 ZFP1Q6P2D0 407 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 BLOC1S5Q8TDH9 187 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 DLG3Q92796 817 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 TOP1MTQ969P6 601 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 MIEF2Q96C03 454 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 MOCOSQ96EN8 888 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 IGSF21Q96ID5 467 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 ECSITQ9BQ95 431 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 VN1R3Q9BXE9 311 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms