RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SLFN11Q7Z7L1 901 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 NLRP14Q86W24 1093 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 SPPL2CQ8IUH8 684 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 MCATQ8IVS2 390 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PCDH20Q8N6Y1 951 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CCDC185Q8N715 623 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 NTAN1Q96AB6 310 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PPP1R16AQ96I34 528 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 MCEEQ96PE7 176 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 RAB6CQ9H0N0 254 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 EBF2Q9HAK2 575 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 TMEM248Q9NWD8 314 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 IL36AQ9UHA7 158 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 GPR160Q9UJ42 338 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 HPCAL4Q9UM19 191 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 DMTF1Q9Y222 760 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 ANKRD36A6QL64 1941 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 A0A1B0GTQ1 180 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 A0A1W2PQC6 194 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 A0A1W2PR77 199 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 TMEM8BA6NDV4 472 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 LRRC53A6NM62 1247 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 PRAMEF26H0Y7S4 382 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 HRKO00198 91 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 TLR4O00206 839 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 KCNK3O14649 394 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 TEX33O43247 280 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 CCP110O43303 1012 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 SMAD6O43541 496 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 MAGEC1O60732 1142 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 RAMP2O60895 175 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ZMPSTE24O75844 475 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 TOP3BO95985 862 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 SERPINC1P01008 464 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 WNT1P04628 370 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 PROS1P07225 676 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 EPHB2P29323 1055 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 MAT2AP31153 395 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 L1CAMP32004 1257 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ACVRL1P37023 503 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ARRB1P49407 418 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 DNA2P51530 1060 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 NXPH1P58417 271 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 TAS2R38P59533 333 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 TPM4P67936 248 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ARF5P84085 180 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 IL9RQ01113 521 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 OVGP1Q12889 678 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 POLD3Q15054 466 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ASIC2Q16515 512 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 SETMARQ53H47 684 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 CARD16Q5EG05 197 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 PIP5KL1Q5T9C9 394 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 SFMBT2Q5VUG0 894 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 NEK5Q6P3R8 708 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 SCYL2Q6P3W7 929 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 DCUN1D2Q6PH85 259 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 WDR59Q6PJI9 974 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 DPY19L3Q6ZPD9 716 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ERN2Q76MJ5 926 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 IRF2BP2Q7Z5L9 587 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 IQCHQ86VS3 1027 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 MCOLN2Q8IZK6 566 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 CHCHD4Q8N4Q1 142 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ANKS4BQ8N8V4 417 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 CHST14Q8NCH0 376 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ARHGEF2Q92974 986 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ISG20Q96AZ6 181 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 VCPIP1Q96JH7 1222 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ELF4Q99607 663 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 HEPHQ9BQS7 1158 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 CNPY3Q9BT09 278 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 HDAC8Q9BY41 377 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 MAGEH1Q9H213 219 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 CATSPERBQ9H7T0 1116 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 CNTD2Q9H8S5 307 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ERVMER34-1Q9H9K5 563 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 GDF3Q9NR23 364 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 ARHGAP20Q9P2F6 1191 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 DNAI1Q9UI46 699 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 KLK13Q9UKR3 277 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 FZD10Q9ULW2 581 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 NEU3Q9UQ49 428 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 MSRB2Q9Y3D2 182 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 EPG5Q9HCE0 2579 aa6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 GOLGA4Q13439 2230 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-213ENST00000476903 LRRK1Q38SD2 2015 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM221BA6H8Z2 402 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ZSCAN5CA6NGD5 496 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 TMCO5BA8MYB1 307 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM72CH0Y354 149 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 WNT9AO14904 365 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FGF10O15520 208 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 TNFSF14O43557 240 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 KDELR3O43731 214 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 CREB3O43889 395 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF821O75541 412 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 PCDH8O95206 1070 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 CD160O95971 181 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 PGRP06401 933 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms