RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PDK2Q15119 407 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 SKOR2Q2VWA4 1001 aaPredicted RBP18.58■□□□□ 0.56
COL7A1-209ENST00000474432 OGFOD3Q6PK18 319 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 Q6ZVL8 140 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 TECPR1Q7Z6L1 1165 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 BBS5Q8N3I7 341 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 PAF1Q8N7H5 531 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 KCTD6Q8NC69 237 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 ATL2Q8NHH9 583 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 CCL4L1Q8NHW4 92 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 TPCN2Q8NHX9 752 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 ARRDC2Q8TBH0 407 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 PTCD2Q8WV60 388 aaKnown RBP18.58■□□□□ 0.56
COL7A1-209ENST00000474432 CTNNBL1Q8WYA6 563 aaPredicted RBP18.58■□□□□ 0.56
COL7A1-209ENST00000474432 RAPGEF5Q92565 580 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 GLMNQ92990 594 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 NAT6Q93015 286 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 NUS1Q96E22 293 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 ATXN7L3BQ96GX2 97 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 BBC3Q96PG8 261 aaPredicted RBP18.58■□□□□ 0.56
COL7A1-209ENST00000474432 TEX101Q9BY14 249 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 TMEM168Q9H0V1 697 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 POLR1BQ9H9Y6 1135 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 SIRPGQ9P1W8 387 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 GULP1Q9UBP9 304 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 GPR34Q9UPC5 381 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 RAI2Q9Y5P3 530 aa18.58■□□□□ 0.56
COL7A1-209ENST00000474432 NOBOXO60393 691 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 TCEA3O75764 348 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 PRLP01236 227 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 CTPS1P17812 591 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 CCNCP24863 283 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 ACTN2P35609 894 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 GABREP78334 506 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 DSC2Q02487 901 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 NIPAL4Q0D2K0 466 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 TRIM14Q14142 442 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 ARMC12Q5T9G4 340 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 RBM44Q6ZP01 1051 aaKnown RBP18.57■□□□□ 0.56
COL7A1-209ENST00000474432 GKN2Q86XP6 184 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 NSMCE1Q8WV22 266 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 CCDC74AQ96AQ1 378 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 WDR26Q9H7D7 661 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 ABHD10Q9NUJ1 306 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 UNC13CQ8NB66 2214 aa18.57■□□□□ 0.56
COL7A1-209ENST00000474432 A0A1W2PQM1 296 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 C3orf70A6NLC5 250 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 PSMD11O00231 422 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 CBFA2T2O43439 604 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 MFAP3LO75121 409 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 SOD1P00441 154 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 CEACAM5P06731 702 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 TPM3P06753 285 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 KRT7P08729 469 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 CYP2A6P11509 494 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 MYCLP1P12525 358 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 KDELR1P24390 212 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 ABCG1P45844 678 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 IFI16Q16666 785 aaKnown RBP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 FAM182AQ5T1J6 154 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 DENND2CQ68D51 928 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 IGF2-ASQ6U949 168 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 HEATR4Q86WZ0 1026 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 NRROSQ86YC3 692 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 SLC35G2Q8TBE7 412 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 ZNF578Q96N58 590 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 RNF157Q96PX1 679 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 FRMD8Q9BZ67 464 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 POLR1EQ9GZS1 481 aaKnown RBP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 PRORYQ9H606 182 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 CYP4F12Q9HCS2 524 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 SPTLC3Q9NUV7 552 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 RBM22Q9NW64 420 aaKnown RBP eCLIP18.56■□□□□ 0.56
COL7A1-209ENST00000474432 DTLQ9NZJ0 730 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 DOLKQ9UPQ8 538 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 SATB2Q9UPW6 733 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 ST14Q9Y5Y6 855 aa18.56■□□□□ 0.56
COL7A1-209ENST00000474432 PRSS38A1L453 326 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 MTA2O94776 668 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 HLA-DQB2P05538 268 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 KELP23276 732 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 TEAD1P28347 426 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 PTSQ03393 145 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 TBX2Q13207 712 aaPredicted RBP18.55■□□□□ 0.56
COL7A1-209ENST00000474432 MESDQ14696 234 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 PLD5Q8N7P1 536 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 SCG3Q8WXD2 468 aaKnown RBP18.55■□□□□ 0.56
COL7A1-209ENST00000474432 GRAMD1AQ96CP6 724 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 TDRD1Q9BXT4 1180 aaKnown RBP18.55■□□□□ 0.56
COL7A1-209ENST00000474432 ABCG8Q9H221 673 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 TSPY26PQ9H489 355 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 NHEJ1Q9H9Q4 299 aaPredicted RBP18.55■□□□□ 0.56
COL7A1-209ENST00000474432 AMACRQ9UHK6 382 aa18.55■□□□□ 0.56
COL7A1-209ENST00000474432 SMG1Q96Q15 3661 aaKnown RBP18.54■□□□□ 0.56
COL7A1-209ENST00000474432 SCN8AQ9UQD0 1980 aa18.54■□□□□ 0.56
COL7A1-209ENST00000474432 A0A0J9YYE9 177 aa18.54■□□□□ 0.56
COL7A1-209ENST00000474432 AKR1B10O60218 316 aa18.54■□□□□ 0.56
COL7A1-209ENST00000474432 TRBC1P01850 177 aa18.54■□□□□ 0.56
COL7A1-209ENST00000474432 MMP2P08253 660 aa18.54■□□□□ 0.56
COL7A1-209ENST00000474432 CCNB1P14635 433 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms