RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC20A1Q8WUM9 679 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 TMEM170AQ8WVE7 144 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 TWNKQ96RR1 684 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 NAP1L4Q99733 375 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 MOV10L1Q9BXT6 1211 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 PLEKHA5Q9HAU0 1116 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 NOD2Q9HC29 1040 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 HCFC1R1Q9NWW0 138 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 IFT80Q9P2H3 777 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 NDRG3Q9UGV2 375 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 TINAGQ9UJW2 476 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 DNAJC16Q9Y2G8 782 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 CRYL1Q9Y2S2 319 aa3.19□□□□□ -1.9
CCDC88A-212ENST00000474059 CBY3A6NI87 242 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 STX16-NPEPL1H3BU86 382 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 STX16O14662 325 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 TUBBP07437 444 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 ITGA2P17301 1181 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 PNPLA4P41247 253 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 TUBP50607 506 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 HSD17B4P51659 736 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 CCR5P51681 352 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 TUBB4BP68371 445 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 UBE3AQ05086 875 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 CHRNDQ07001 517 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 CTXN3Q4LDR2 81 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 JAKMIP3Q5VZ66 844 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 WDR73Q6P4I2 378 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 BBS12Q6ZW61 710 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 GTSCR1Q86UQ5 136 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 TMTC1Q8IUR5 882 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 GHDCQ8N2G8 530 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 KTI12Q96EK9 354 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 CTDSP1Q9GZU7 261 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 MAF1Q9H063 256 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 RASSF1Q9NS23 344 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 SPATS2LQ9NUQ6 558 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 TMEM160Q9NX00 188 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 SUFUQ9UMX1 484 aa3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 RRP7AQ9Y3A4 280 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-212ENST00000474059 A0A0U1RQF3 1178 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 EBAG9O00559 213 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 HOXC11O43248 304 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 CNPP09543 421 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 FMO5P49326 533 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 HDAC4P56524 1084 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 GNB1P62873 340 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 TLE2Q04725 743 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 TRPC3Q13507 836 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 SOWAHAQ2M3V2 549 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 INTS11Q5TA45 600 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 MAP3K21Q5TCX8 1036 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 SPINK14Q6IE38 97 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 FAM122CQ6P4D5 195 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 SRBD1Q8N5C6 995 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 ESX1Q8N693 406 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 CADM4Q8NFZ8 388 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 LINS1Q8NG48 757 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 RND1Q92730 232 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 SNAPC3Q92966 411 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 RBM17Q96I25 401 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 REEP2Q9BRK0 252 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 CDK19Q9BWU1 502 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 UBA5Q9GZZ9 404 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 WASH6PQ9NQA3 447 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 ENTPD7Q9NQZ7 604 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 TMEM30AQ9NV96 361 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 ZNF69Q9UC07 566 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 KCNK7Q9Y2U2 307 aa3.17□□□□□ -1.9
CCDC88A-212ENST00000474059 VWA3AA6NCI4 1184 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 MTA2O94776 668 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 PAX1P15863 534 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 IL15P40933 162 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 TBX2Q13207 712 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 G3BP1Q13283 466 aaKnown RBP eCLIP3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 ANKRD1Q15327 319 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 ESCO2Q56NI9 601 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 PPP6R3Q5H9R7 873 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 B3GNT6Q6ZMB0 384 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 CCNI2Q6ZMN8 369 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 HEATR4Q86WZ0 1026 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 USP38Q8NB14 1042 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 NAXEQ8NCW5 288 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 TRIM58Q8NG06 486 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 HTRA1Q92743 480 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 HVCN1Q96D96 273 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 SEC62Q99442 399 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 SLC13A4Q9UKG4 626 aa3.16□□□□□ -1.9
CCDC88A-212ENST00000474059 J3KRW8 73 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 KLK10O43240 276 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 KLK8O60259 260 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 PRSS1P07477 247 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 TFPIP10646 304 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 XBP1P17861 261 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 DCTP40126 519 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 CBWD5Q5RIA9 395 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 ATG16L1Q676U5 607 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF852Q6ZMS4 543 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms