RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 EEF1B2P24534 225 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CAPGP40121 348 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 KDSRQ06136 332 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 BMPR2Q13873 1038 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CA9Q16790 459 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TTLL9Q3SXZ7 439 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 VARS2Q5ST30 1063 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TTC23LQ6PF05 361 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PTF1AQ7RTS3 328 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 LINC00523Q86TU6 105 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 LRRTM3Q86VH5 581 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TBC1D21Q8IYX1 336 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 FAM71DQ8N9W8 422 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ATXN7L3BQ96GX2 97 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 MSTO1Q9BUK6 570 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 E2F8A0AVK6 867 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ASPDHA6ND91 283 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 UGT1A9O60656 530 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ARHGEF15O94989 841 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 LCP1P13796 627 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 BCAR1P56945 870 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CD47Q08722 323 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SETMARQ53H47 684 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RBM48Q5RL73 367 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TTC23Q5W5X9 447 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PIWIL3Q7Z3Z3 882 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 AMIGO2Q86SJ2 522 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 IGFN1Q86VF2 1251 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 DNAJB8Q8NHS0 232 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 LPGAT1Q92604 370 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CCDC126Q96EE4 140 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 FAM167AQ96KS9 214 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 MCEEQ96PE7 176 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SOSTQ9BQB4 213 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 MRPL57Q9BQC6 102 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 C9orf16Q9BUW7 83 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 EIF2AQ9BY44 585 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 UGT1A7Q9HAW7 530 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 UGT1A10Q9HAW8 530 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 UGT1A8Q9HAW9 530 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SPAG4Q9NPE6 437 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GPR45Q9Y5Y3 372 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GABRDO14764 452 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GPC4O75487 556 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GH2P01242 217 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GFAPP14136 432 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GPD1P21695 349 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CPA2P48052 419 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ATN1P54259 1190 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PMS2P3Q13401 168 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RAB39AQ14964 217 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 KCNJ8Q15842 424 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SHROOM1Q2M3G4 852 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RAP1GAP2Q684P5 730 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SMIM5Q71RC9 77 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RBM23Q86U06 439 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ERO1BQ86YB8 467 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RNF135Q8IUD6 432 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CLYBLQ8N0X4 340 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SMOC2Q9H3U7 446 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CCDC78A2IDD5 438 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SYNDIG1LA6NDD5 238 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 BOLA2-SMG1P6H3BVE0 249 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 DFFAO00273 331 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 EEF2KO00418 725 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SORBS2O94875 1100 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 JAK1P23458 1154 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GRIA1P42261 906 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SLC5A3P53794 718 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SLC22A17Q8WUG5 538 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PDXPQ96GD0 296 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RNF208Q9H0X6 261 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TRPV6Q9H1D0 765 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RMND5AQ9H871 391 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 AIG1Q9NVV5 245 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 EIF3LQ9Y262 564 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TRAF6Q9Y4K3 522 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CNOT3O75175 753 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CAPN3P20807 821 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 POLR2IP36954 125 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CXCR3P49682 368 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 NRLP54845 237 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 DUOXA2Q1HG44 320 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PDZD4Q76G19 769 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 KDELC2Q7Z4H8 507 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF467Q7Z7K2 595 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RNF180Q86T96 592 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 MSRB3Q8IXL7 192 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 FSTL5Q8N475 847 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 EMID1Q96A84 441 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ELMO3Q96BJ8 720 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 GON7Q9BXV9 100 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PRKD2Q9BZL6 878 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RUBCNLQ9H714 662 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 ASAH2Q9NR71 780 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 IGSF5Q9NSI5 407 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 NDUFAF1Q9Y375 327 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TRIM77I1YAP6 450 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms