RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 MYBPHQ13203 477 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 SF3B4Q15427 424 aaKnown RBP eCLIP5.67□□□□□ -1.5
CCDC39-202ENST00000471307 EDRF1Q3B7T1 1238 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 XKR9Q5GH70 373 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 KCNH5Q8NCM2 988 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 GDPD5Q8WTR4 605 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 NR4A3Q92570 626 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 ZNF385AQ96PM9 386 aaKnown RBP5.67□□□□□ -1.5
CCDC39-202ENST00000471307 LMAN2LQ9H0V9 348 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 EPHX3Q9H6B9 360 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 PCDHGB5Q9Y5G0 923 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 ANKRD26Q9UPS8 1709 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 MAGEA13PA6NCF6 341 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 CBY3A6NI87 242 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 PEX12O00623 359 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 EIF3JO75822 258 aaKnown RBP5.66□□□□□ -1.5
CCDC39-202ENST00000471307 LDHAP00338 332 aaKnown RBP5.66□□□□□ -1.5
CCDC39-202ENST00000471307 TFPIP10646 304 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 PCNAP12004 261 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 TNNT2P45379 298 aaPredicted RBP5.66□□□□□ -1.5
CCDC39-202ENST00000471307 ILF3Q12906 894 aaKnown RBP eCLIP5.66□□□□□ -1.5
CCDC39-202ENST00000471307 TAF5Q15542 800 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 FAM69BQ5VUD6 431 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 LRRC59Q96AG4 307 aaKnown RBP5.66□□□□□ -1.5
CCDC39-202ENST00000471307 TBC1D20Q96BZ9 403 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 BICD1Q96G01 975 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 CFAP53Q96M91 514 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 COG8Q96MW5 612 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 TWNKQ96RR1 684 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 CLSTN3Q9BQT9 956 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 PYM1Q9BRP8 204 aaKnown RBP5.66□□□□□ -1.5
CCDC39-202ENST00000471307 TAOK3Q9H2K8 898 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 ALKBH4Q9NXW9 302 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 MAP2P11137 1827 aaKnown RBP5.66□□□□□ -1.5
CCDC39-202ENST00000471307 NRKQ7Z2Y5 1582 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 INSRP06213 1382 aa5.66□□□□□ -1.5
CCDC39-202ENST00000471307 OVOS2A0A0J9YW53 1432 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 OVOS2Q6IE36 1432 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 TYW5A2RUC4 315 aaKnown RBP5.65□□□□□ -1.5
CCDC39-202ENST00000471307 PER2O15055 1255 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 CEP104O60308 925 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 PEX14O75381 377 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 SRD5A1P18405 259 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 CD72P21854 359 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 DLX5P56178 289 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 DLG1Q12959 904 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 CALCRLQ16602 461 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 CCDC184Q52MB2 194 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 FAM76BQ5HYJ3 339 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 C17orf99Q6UX52 265 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 EXOC3L1Q86VI1 746 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 MTBPQ96DY7 904 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.65□□□□□ -1.5
CCDC39-202ENST00000471307 POLKQ9UBT6 870 aa5.65□□□□□ -1.5
CCDC39-202ENST00000471307 ARHGEF10O15013 1369 aa5.65□□□□□ -1.51
CCDC39-202ENST00000471307 PXDNQ92626 1479 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 PIK3C2AO00443 1686 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 USP54Q70EL1 1684 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 CPED1A4D0V7 1026 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 HMGB1P1B2RPK0 211 aaPredicted RBP5.64□□□□□ -1.51
CCDC39-202ENST00000471307 J3KR12 359 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 KLK10O43240 276 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 BUB3O43684 328 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 CAMTA2O94983 1202 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 GPTP24298 496 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 CHATP28329 748 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 HDAC4P56524 1084 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 DHX34Q14147 1143 aaKnown RBP5.64□□□□□ -1.51
CCDC39-202ENST00000471307 MAP3K21Q5TCX8 1036 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 RETSATQ6NUM9 610 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 RHBDF2Q6PJF5 856 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 GSG1LQ6UXU4 331 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 SHFQ7M4L6 423 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 PGBD5Q8N414 524 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 SNAPC3Q92966 411 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 IL17FQ96PD4 163 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 OR1F2PQ96R84 312 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 CYSLTR2Q9NS75 346 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 NUDCQ9Y266 331 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 TRPM3Q9HCF6 1732 aaPredicted RBP5.64□□□□□ -1.51
CCDC39-202ENST00000471307 KIF24Q5T7B8 1368 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 PNPLA6Q8IY17 1366 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 TNS3Q68CZ2 1445 aa5.64□□□□□ -1.51
CCDC39-202ENST00000471307 SAA2-SAA4A0A096LPE2 208 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 NBNO60934 754 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 MTA2O94776 668 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 DDNO94850 711 aaPredicted RBP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 NDUFB4O95168 129 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 F7P08709 466 aaPredicted RBP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 GPD2P43304 727 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 AMPHP49418 695 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 NR1H2P55055 460 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 RRS1Q15050 365 aaKnown RBP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 WDR43Q15061 677 aaKnown RBP eCLIP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 GRAMD1BQ3KR37 738 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 GFI1BQ5VTD9 330 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 TBC1D26Q86UD7 250 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 SUGP1Q8IWZ8 645 aaKnown RBP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 FAM9BQ8IZU0 186 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms