RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 A0A1W2PQ45 241 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 A0A1W2PQY0 241 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 NCF1BA6NI72 391 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 TRPC5OSA6NMA1 111 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 NCF1CA8MVU1 366 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 TMEM189-UBE2V1I3L0A0 370 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 IGLV3-27P01718 113 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 KLKB1P03952 638 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 RPLP2P05387 115 aaKnown RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 NCF1P14598 390 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 CD1DP15813 335 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 IMPDH1P20839 514 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 HOXD9P28356 352 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 FMO4P31512 558 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 FUT10Q6P4F1 479 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 C16orf59Q7L2K0 433 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PGAM4Q8N0Y7 254 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PQLC1Q8N2U9 271 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 RMDN1Q96DB5 314 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 NACA2Q9H009 215 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 STARD7Q9NQZ5 370 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PCDHGA7Q9Y5G6 932 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 SYN3O14994 580 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 SMIM24O75264 130 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PAPSS2O95340 614 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 WISP3O95389 354 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 RBP1P09455 135 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PDAP1Q13442 181 aaKnown RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 FASTKQ14296 549 aaKnown RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 MMEL1Q495T6 779 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 THEMIS2Q5TEJ8 643 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 LINGO4Q6UY18 593 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 ARHGAP18Q8N392 663 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PTGR2Q8N8N7 351 aaPredicted RBP19.1■□□□□ 0.65
VIM-203ENST00000469543 MDGA1Q8NFP4 955 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 IL1RL2Q9HB29 575 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PCDHB7Q9Y5E2 793 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 DNAJC15Q9Y5T4 150 aa19.1■□□□□ 0.65
VIM-203ENST00000469543 PSMD12O00232 456 aaPredicted RBP19.09■□□□□ 0.65
VIM-203ENST00000469543 GPC4O75487 556 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 ALDOCP09972 364 aaKnown RBP19.09■□□□□ 0.65
VIM-203ENST00000469543 MTHFD2P13995 350 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PMLP29590 882 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 GPR17Q13304 367 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PTK2BQ14289 1009 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 SLC14A2Q15849 920 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 GEN1Q17RS7 908 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 CYP2R1Q6VVX0 501 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 SPATA24Q86W54 205 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 GALNT4Q8N4A0 578 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 DCBLD1Q8N8Z6 715 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PPP2R3CQ969Q6 453 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 CDKN2AIPNLQ96HQ2 116 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PPP1R2P1Q96PQ5 205 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 SEMA6AQ9H2E6 1030 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 MEAF6Q9HAF1 191 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PDFQ9HBH1 243 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 TSR3Q9UJK0 312 aaKnown RBP19.09■□□□□ 0.65
VIM-203ENST00000469543 OR1I1O60431 355 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 IRF1P10914 325 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 FGFR3P22607 806 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 ME2P23368 584 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 MAGEA11P43364 429 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PARP15Q460N3 678 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PAQR3Q6TCH7 311 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 OR4K2Q8NGD2 314 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 OR4L1Q8NH43 312 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 FAM110BQ8TC76 370 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 ZNF512Q96ME7 567 aaPredicted RBP19.09■□□□□ 0.65
VIM-203ENST00000469543 SERPINI1Q99574 410 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 SLC30A3Q99726 388 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PKP2Q99959 881 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 MRPL1Q9BYD6 325 aaKnown RBP19.09■□□□□ 0.65
VIM-203ENST00000469543 TMEM161AQ9NX61 479 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PRPF19Q9UMS4 504 aaKnown RBP19.09■□□□□ 0.65
VIM-203ENST00000469543 MED16Q9Y2X0 877 aa19.09■□□□□ 0.65
VIM-203ENST00000469543 PRRC2BQ5JSZ5 2229 aaKnown RBP19.09■□□□□ 0.65
VIM-203ENST00000469543 CBX4O00257 560 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 ACOT8O14734 319 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 CSPG5O95196 566 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 SP3Q02447 781 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 FOLH1Q04609 750 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 MED21Q13503 144 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 TLR1Q15399 786 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 SETMARQ53H47 684 aaPredicted RBP19.08■□□□□ 0.65
VIM-203ENST00000469543 CHSY3Q70JA7 882 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 LRRC8DQ7L1W4 858 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 ATP6V1E2Q96A05 226 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 TSPAN17Q96FV3 270 aa19.08■□□□□ 0.65
VIM-203ENST00000469543 MYOCOSA0A1B0GUC4 107 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 PRORSD1PA6NEY8 169 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 F5H5T6 163 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 UQCRBP14927 111 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 ZNF37AP17032 561 aaPredicted RBP19.08■□□□□ 0.64
VIM-203ENST00000469543 PSME3P61289 254 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 UGT3A2Q3SY77 523 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 CD99L2Q8TCZ2 262 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 BRSK1Q8TDC3 778 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 TRPC4APQ8TEL6 797 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 SCLYQ96I15 445 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms