RNA–Protein interactions for RNA: ENST00000467326.5

VPS50-209, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-209ENST00000467326 CLIP4Q8N3C7 705 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 CPXM2Q8N436 756 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 CARNMT1Q8N4J0 409 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 NEXN-AS1Q8NBZ9 246 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 SMRP1Q8NCR6 262 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 TMED6Q8WW62 240 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 SNX21Q969T3 373 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 CCDC43Q96MW1 224 aaKnown RBP3.88□□□□□ -1.79
VPS50-209ENST00000467326 EYA3Q99504 573 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 SIL1Q9H173 461 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 CDT1Q9H211 546 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 PDCL3Q9H2J4 239 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 SLC32A1Q9H598 525 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 TBC1D29Q9UFV1 150 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 AGO1Q9UL18 857 aaKnown RBP3.88□□□□□ -1.79
VPS50-209ENST00000467326 TMEM5Q9Y2B1 443 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 PCDHGB1Q9Y5G3 927 aa3.88□□□□□ -1.79
VPS50-209ENST00000467326 TDRD9Q8NDG6 1382 aaKnown RBP3.88□□□□□ -1.79
VPS50-209ENST00000467326 CBY3A6NI87 242 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 PRSS44E7EML9 344 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 PRR23D1E9PI22 279 aaPredicted RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 AP3D1O14617 1153 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 TMEM63AO94886 807 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 THEGLP0DJG4 465 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 PRR23D2P0DMB1 279 aaPredicted RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 SCG2P13521 617 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 HOXD13P35453 343 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 ACTN2P35609 894 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 PDLIM4P50479 330 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 SEC61A1P61619 476 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 HMGN5P82970 282 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 ADORA2A-AS1P86434 159 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 KIF5AQ12840 1032 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 PRPF4BQ13523 1007 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 PKN2Q16513 984 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 EDRF1Q3B7T1 1238 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 PLEKHO1Q53GL0 409 aaPredicted RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 PARP10Q53GL7 1025 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 C9orf57Q5W0N0 161 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 TYW3Q6IPR3 259 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 NAA16Q6N069 864 aaPredicted RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 CNSTQ6PJW8 725 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 ABRAXAS1Q6UWZ7 409 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 C17orf99Q6UX52 265 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 MFSD6Q6ZSS7 791 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 BBS12Q6ZW61 710 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 PRSS45Q7RTY3 260 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 LURAP1LQ8IV03 231 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 SFTPA2Q8IWL1 248 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 MB21D2Q8IYB1 491 aaPredicted RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 DCP1BQ8IZD4 617 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 RBMXL3Q8N7X1 1067 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 AVL9Q8NBF6 648 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 HERVK_113Q902F9 699 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 ZUFSPQ96AP4 578 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 OTULINQ96BN8 352 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 NSUN4Q96CB9 384 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 TRIM44Q96DX7 344 aaPredicted RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 FIZ1Q96SL8 496 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 EDEM3Q9BZQ6 932 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 VPS33BQ9H267 617 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 TAOK3Q9H2K8 898 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 SYNCQ9H7C4 482 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 XAB2Q9HCS7 855 aaKnown RBP3.87□□□□□ -1.79
VPS50-209ENST00000467326 ANKRD10Q9NXR5 420 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 ZNF711Q9Y462 761 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 SNX8Q9Y5X2 465 aa3.87□□□□□ -1.79
VPS50-209ENST00000467326 ARHGAP10A1A4S6 786 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 RTCAO00442 366 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 PSMA7O14818 248 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 ATP2C2O75185 946 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 TFPIP10646 304 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 RPL3P39023 403 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 GPD2P43304 727 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 CLCN5P51795 746 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 GAS1P54826 345 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 RRP1P56182 461 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 EVCP57679 992 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 YWHAZP63104 245 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 TRAF3Q13114 568 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 RUNX2Q13950 521 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 EIF4A2Q14240 407 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 BECN1Q14457 450 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 ACAD10Q6JQN1 1059 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 C11orf88Q6PI97 169 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 ADGRG6Q86SQ4 1221 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 EPHX4Q8IUS5 362 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 NGEFQ8N5V2 710 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 TMCO5AQ8N6Q1 288 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 ST8SIA4Q92187 359 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 RTP4Q96DX8 246 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 FEM1CQ96JP0 617 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 SLC25A33Q9BSK2 321 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 PHF7Q9BWX1 381 aaPredicted RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 PAIP1Q9H074 479 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 EIF2B3Q9NR50 452 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 OCIAD1Q9NX40 245 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 DCAF16Q9NXF7 216 aa3.86□□□□□ -1.79
VPS50-209ENST00000467326 ADD3Q9UEY8 706 aaKnown RBP3.86□□□□□ -1.79
VPS50-209ENST00000467326 RPS6KA6Q9UK32 745 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms