RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 ADGRE3Q9BY15 652 aa18.29■□□□□ 0.52
COL9A3-205ENST00000466192 CRYL1Q9Y2S2 319 aa18.29■□□□□ 0.52
COL9A3-205ENST00000466192 RANBP2P49792 3224 aaKnown RBP18.29■□□□□ 0.52
COL9A3-205ENST00000466192 A0A087X1B8 175 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 PRSS56P0CW18 603 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 TUBB3Q13509 450 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 UBAP2LQ14157 1087 aaKnown RBP18.28■□□□□ 0.52
COL9A3-205ENST00000466192 RCN2Q14257 317 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 RETSATQ6NUM9 610 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 BTBD10Q9BSF8 475 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 TM6SF2Q9BZW4 377 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 CATSPERZQ9NTU4 200 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 KIAA1522Q9P206 1035 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-205ENST00000466192 INTS6Q9UL03 887 aaKnown RBP18.28■□□□□ 0.52
COL9A3-205ENST00000466192 APOBEC2Q9Y235 224 aaKnown RBP18.28■□□□□ 0.52
COL9A3-205ENST00000466192 PRRC2BQ5JSZ5 2229 aaKnown RBP18.28■□□□□ 0.52
COL9A3-205ENST00000466192 TMEM114B3SHH9 223 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 SLC4A1P02730 911 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 CHRNGP07510 517 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 RHOP08100 348 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 CPA2P48052 419 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 GRIA4P48058 902 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 IDH3AP50213 366 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 UBE3AQ05086 875 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 MRNIPQ6NTE8 343 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 RINLQ6ZS11 566 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 HEXDCQ8WVB3 486 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 ACDQ96AP0 544 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 MCOLN1Q9GZU1 580 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 IGSF5Q9NSI5 407 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 VWA7Q9Y334 891 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 RWDD3Q9Y3V2 267 aa18.28■□□□□ 0.52
COL9A3-205ENST00000466192 C5orf67F2Z3F1 127 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 ZNF195O14628 629 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 GYG2O15488 501 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 FZD6O60353 706 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 H2AFYO75367 372 aaKnown RBP18.27■□□□□ 0.52
COL9A3-205ENST00000466192 PSMA3P25788 255 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 ABL2P42684 1182 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 CCR10P46092 362 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 NAGLUP54802 743 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 CDKN2DP55273 166 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 CSHL1Q14406 222 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 PLEKHG6Q3KR16 790 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 EFHBQ8N7U6 833 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 OR6K2Q8NGY2 324 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 USP13Q92995 863 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-205ENST00000466192 CCDC106Q9BWC9 280 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 STN1Q9H668 368 aaKnown RBP18.27■□□□□ 0.52
COL9A3-205ENST00000466192 PCDHB9Q9Y5E1 797 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 TRANK1O15050 2925 aa18.27■□□□□ 0.52
COL9A3-205ENST00000466192 A0A0U1RQS6 177 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 C2orf81A6NN90 581 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 PRR5-ARHGAP8B1AHC4 643 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 DLX3O60479 287 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 DIAPH2O60879 1101 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 CLASP2O75122 1294 aaKnown RBP18.27■□□□□ 0.51
COL9A3-205ENST00000466192 NTHL1P78549 312 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 ARHGAP8P85298 464 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 TSNAXIP1Q2TAA8 658 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 ZNF549Q6P9A3 640 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 RTL10Q7L3V2 364 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 FAM13CQ8NE31 585 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 SGF29Q96ES7 293 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 LMLNQ96KR4 655 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 CADM1Q9BY67 442 aaKnown RBP18.27■□□□□ 0.51
COL9A3-205ENST00000466192 CDH19Q9H159 772 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 DNAJC28Q9NX36 388 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 TAS2R1Q9NYW7 299 aa18.27■□□□□ 0.51
COL9A3-205ENST00000466192 MTF2Q9Y483 593 aaPredicted RBP18.27■□□□□ 0.51
COL9A3-205ENST00000466192 GRXCR1A8MXD5 290 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 CHUKO15111 745 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 FGF19O95750 216 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 ATP5BP06576 529 aaKnown RBP18.26■□□□□ 0.51
COL9A3-205ENST00000466192 ALOX15P16050 662 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-205ENST00000466192 LPOP22079 712 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-205ENST00000466192 DDX6P26196 483 aaKnown RBP eCLIP18.26■□□□□ 0.51
COL9A3-205ENST00000466192 KDSRQ06136 332 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 RALGPS1Q5JS13 557 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 TTC8Q8TAM2 541 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 TSPAN17Q96FV3 270 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 MRPL46Q9H2W6 279 aaKnown RBP18.26■□□□□ 0.51
COL9A3-205ENST00000466192 TLE6Q9H808 572 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 COG4Q9H9E3 785 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 GPAMQ9HCL2 828 aa18.26■□□□□ 0.51
COL9A3-205ENST00000466192 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.26■□□□□ 0.511e-6■■■□□ 14.9
COL9A3-205ENST00000466192 WISP3O95389 354 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-205ENST00000466192 CYBBP04839 570 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 BMP1P13497 986 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 OGNP20774 298 aaKnown RBP18.25■□□□□ 0.51
COL9A3-205ENST00000466192 STC1P52823 247 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 AP1S1P61966 158 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 TYSND1Q2T9J0 566 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 CFAP157Q5JU67 520 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 ZNF697Q5TEC3 545 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 TMEM207Q6UWW9 146 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 TMEM25Q86YD3 366 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 CAMK1DQ8IU85 385 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 AGAP11Q8TF27 550 aa18.25■□□□□ 0.51
COL9A3-205ENST00000466192 ANKRD49Q8WVL7 239 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms