RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 WASF2Q9Y6W5 498 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 MSCO60682 206 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 CREB1P16220 341 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 PTPN9P43378 593 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 CRTC3Q6UUV7 619 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 DHX15O43143 795 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 NPHS1O60500 1241 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 TULP3O75386 442 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 CATP04040 527 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 RPN2P04844 631 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 UNGP13051 313 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 PTPRNQ16849 979 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 REP15Q6BDI9 236 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 NIPA2Q8N8Q9 360 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 OR4L1Q8NH43 312 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 PLSCR1O15162 318 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 RAB25P57735 213 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 HERC3Q15034 1050 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 PRKD1Q15139 912 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 CYP2A13Q16696 494 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 EGFLAMQ63HQ2 1017 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 NETO2Q8NC67 525 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 HPS1Q92902 700 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 MLPHQ9BV36 600 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 SLITRK2Q9H156 845 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 WBP11Q9Y2W2 641 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 NRCAMQ92823 1304 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 DYRK3O43781 588 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 PQBP1O60828 265 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 LRIG2O94898 1065 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 CRATP43155 626 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 RPS9P46781 194 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 PSEN2P49810 448 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 POLR2LP62875 67 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 SLC9A5Q14940 896 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 SHROOM1Q2M3G4 852 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 ABHD15Q6UXT9 468 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 KIAA0319LQ8IZA0 1049 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 CYP4X1Q8N118 509 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 VPS35Q96QK1 796 aa19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 IFT80Q9P2H3 777 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-204ENST00000463837 NTRK1P04629 796 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 AHI1Q8N157 1196 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 HM13Q8TCT9 377 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 GBA3Q9H227 469 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 PRKAG3Q9UGI9 489 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 PTPRAP18433 802 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 STX4Q12846 297 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 ARL13AQ5H913 290 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 CERCAMQ5T4B2 595 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 OR52K2Q8NGK3 314 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 XYLBO75191 536 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 SERPINA4P29622 427 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 WNT3AP56704 352 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 CCNYL2Q5T2Q4 361 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 SATL1Q86VE3 508 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 SPATA5L1Q9BVQ7 753 aa19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 UXTQ9UBK9 157 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-204ENST00000463837 TCHHQ07283 1943 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 KLF11O14901 512 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 GUCY1B2O75343 617 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 ACADMP11310 421 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 CKBP12277 381 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 SRP54P61011 504 aaKnown RBP19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 SLC39A12Q504Y0 691 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 USP45Q70EL2 814 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 MTSS1LQ765P7 747 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 SPPL2CQ8IUH8 684 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 VPS4AQ9UN37 437 aa19.02■□□□□ 0.63
CCDC88B-204ENST00000463837 THRBP10828 461 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 CYP4F2P78329 520 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 CYP4F3Q08477 520 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 LSM12Q3MHD2 195 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 KHDRBS2Q5VWX1 349 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 SLC39A8Q9C0K1 460 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 KCNU1A8MYU2 1149 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 PLK4O00444 970 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 TUFMP49411 452 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 TIGD2Q4W5G0 525 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 GLYATQ6IB77 296 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 ARMCX6Q7L4S7 300 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 AKT1S1Q96B36 256 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 KCTD15Q96SI1 283 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 SEMA3CQ99985 751 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 CXorf21Q9HAI6 301 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 PLCL1Q15111 1095 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 ANXA8L1Q5VT79 327 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 HDAC10Q969S8 669 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 TRIM17Q9Y577 477 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 IGLV3-22A0A075B6J6 115 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 LPOP22079 712 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 KLRC2P26717 231 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 ADRA1BP35368 520 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 ERICH5Q6P6B1 374 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 DCLRE1AQ6PJP8 1040 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 OR52E6Q96RD3 313 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 NLNQ9BYT8 704 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 ZFP14Q9HCL3 533 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 ZSCAN32Q9NX65 697 aa19.01■□□□□ 0.63
CCDC88B-204ENST00000463837 ADGRE2Q9UHX3 823 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms