RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	PALM	O75781	387 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	CPNE6	O95741	557 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	SOD1	P00441	154 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	FGF3	P11487	239 aa	Predicted RBP	11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	MYCLP1	P12525	358 aa	Predicted RBP	11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	ERCC2	P18074	760 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	CD82	P27701	267 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	CD1C	P29017	333 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	COPB1	P53618	953 aa	Known RBP	11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	MAPK10	P53779	464 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	OR1D5	P58170	312 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	BCL2L1	Q07817	233 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	IL10RB	Q08334	325 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	MAMLD1	Q13495	774 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	SQSTM1	Q13501	440 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	DPYS	Q14117	519 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	RFTN1	Q14699	578 aa	Predicted RBP	11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	CNGA3	Q16281	694 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	MANEA	Q5SRI9	462 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	PLEKHA7	Q6IQ23	1121 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	RBM43	Q6ZSC3	357 aa	Known RBP	11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	RFX8	Q6ZV50	586 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	NAGS	Q8N159	534 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	PGBD5	Q8N414	524 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	PATE1	Q8WXA2	126 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	SCARF2	Q96GP6	870 aa	Predicted RBP	11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	TRIM7	Q9C029	511 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	NUP62CL	Q9H1M0	184 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	DPEP2	Q9H4A9	486 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	FANCL	Q9NW38	375 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	LIMA1	Q9UHB6	759 aa	Known RBP	11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	PCDHGA3	Q9Y5H0	932 aa		11.17	□□□□□ -0.62
PTPN7-204	ENST00000462815	ARHGAP42	A6NI28	874 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	LRRC10B	A6NIK2	292 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	LGALS16	A8MUM7	142 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815		A8MX80	341 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	EIF3CL	B5ME19	914 aa	Known RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	EEF2K	O00418	725 aa	Known RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	HGS	O14964	777 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	HEXIM1	O94992	359 aa	Known RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	ECEL1	O95672	775 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	THRA	P10827	490 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	KEL	P23276	732 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	AK4	P27144	223 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	TEAD1	P28347	426 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	LIMK2	P53671	638 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	AP1S1	P61966	158 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	SLC10A7	Q0GE19	358 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	PTPRR	Q15256	657 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	CLPP	Q16740	277 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	MAP9	Q49MG5	647 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	CFAP58	Q5T655	872 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	PHF19	Q5T6S3	580 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	ACAD10	Q6JQN1	1059 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	HSD11B1L	Q7Z5J1	315 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	IRF2BP2	Q7Z5L9	587 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	HEATR4	Q86WZ0	1026 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	BMPER	Q8N8U9	685 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	RCBTB1	Q8NDN9	531 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	KIAA1524	Q8TCG1	905 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	ZDHHC1	Q8WTX9	485 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	NKD1	Q969G9	470 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	NUS1	Q96E22	293 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	DTD2	Q96FN9	168 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	CCDC74B	Q96LY2	380 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	ERGIC2	Q96RQ1	377 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	EIF3C	Q99613	913 aa	Known RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	ARHGAP9	Q9BRR9	750 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	CINP	Q9BW66	212 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	SPRY4	Q9C004	299 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	CARS2	Q9HA77	564 aa	Known RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	GEMIN8	Q9NWZ8	242 aa	Known RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	TRNAU1AP	Q9NX07	287 aa	Known RBP	11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	TMEM9	Q9P0T7	183 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	SEPT10	Q9P0V9	454 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	TAAR2	Q9P1P5	351 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	SUFU	Q9UMX1	484 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	SLC17A4	Q9Y2C5	497 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	TEX15	Q9BXT5	2789 aa		11.16	□□□□□ -0.62
PTPN7-204	ENST00000462815	TMEM191C	A6NGB0	347 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	PPM1D	O15297	605 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	ATMIN	O43313	823 aa	Predicted RBP	11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	TNFAIP3	P21580	790 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	ETV3	P41162	512 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	GPR3	P46089	330 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	SCNN1B	P51168	640 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	CDK3	Q00526	305 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	TRAF2	Q12933	501 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	ARHGEF7	Q14155	803 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	IHH	Q14623	411 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	TSR1	Q2NL82	804 aa	Known RBP	11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	FKBP15	Q5T1M5	1219 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	ERMARD	Q5T6L9	678 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	ATG14	Q6ZNE5	492 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	TECPR1	Q7Z6L1	1165 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	PIM3	Q86V86	326 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	ZNF599	Q96NL3	588 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	GBP4	Q96PP9	640 aa		11.15	□□□□□ -0.62
PTPN7-204	ENST00000462815	MCCC1	Q96RQ3	725 aa	Predicted RBP	11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms