RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PALMDQ9NP74 551 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 TREM1Q9NP99 234 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 BTBD7Q9P203 1132 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ASH2LQ9UBL3 628 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CPNE7Q9UBL6 633 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 FAF1Q9UNN5 650 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 PIN4Q9Y237 131 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 MAP3K2Q9Y2U5 619 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 PCDHA5Q9Y5H7 936 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ABCC12Q96J65 1359 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 COL4A5P29400 1685 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 SRRM3A6NNA2 597 aaPredicted RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 H3BM21 787 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 UBE2CO00762 179 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 CXCL11O14625 94 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 SHOX2O60902 331 aaPredicted RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ADAM23O75077 832 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PSIP1O75475 530 aaKnown RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF205O95201 554 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PCDH8O95206 1070 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT3P12035 628 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 TSHRP16473 764 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 TCN1P20061 433 aaPredicted RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 NMT1P30419 496 aaKnown RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ADRA1BP35368 520 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 IGHMBP2P38935 993 aaKnown RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 DPP6P42658 865 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PITPNBP48739 271 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 CLK3P49761 638 aaKnown RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 CCNG1P51959 295 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 MAP2K6P52564 334 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 METAP1P53582 386 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 RAB1AP62820 205 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 LMAN2Q12907 356 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PMS2P3Q13401 168 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 CUL4AQ13619 759 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 KCNA10Q16322 511 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ZCWPW2Q504Y3 356 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 DGKKQ5KSL6 1271 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 CDKL4Q5MAI5 379 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 BEND3Q5T5X7 828 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 NOTUMQ6P988 496 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 RTL4Q6ZR62 310 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 MSANTD1Q6ZTZ1 278 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 DENND5BQ6ZUT9 1274 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC51AQ86UW1 340 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 LRRTM4Q86VH4 590 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM200AQ86VY9 491 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PYROXD2Q8N2H3 581 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 DPP10Q8N608 796 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ATG16L2Q8NAA4 619 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF248Q8NDW4 579 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 SIMC1Q8NDZ2 872 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PIGOQ8TEQ8 1089 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PDCD6IPQ8WUM4 868 aaKnown RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 HEXDCQ8WVB3 486 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 UBLCP1Q8WVY7 318 aaPredicted RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 POMGNT1Q8WZA1 660 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM122AQ96E09 287 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM227BQ96M60 508 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 RANBP9Q96S59 729 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 MYL10Q9BUA6 226 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 COL25A1Q9BXS0 654 aaPredicted RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 KCNF1Q9H3M0 494 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 RIMS4Q9H426 269 aaPredicted RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ACSS2Q9NR19 701 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 C1GALT1Q9NS00 363 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC35D1Q9NTN3 355 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 NOP53Q9NZM5 478 aaKnown RBP4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 FBLN5Q9UBX5 448 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ERVK-11Q9UQG0 969 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 VWA7Q9Y334 891 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF175Q9Y473 711 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 PCDHA13Q9Y5I0 950 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 USH1CQ9Y6N9 552 aa4.84□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM90A27PA6NNH2 459 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PGRMC1O00264 195 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 TERTO14746 1132 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 DCLK1O15075 740 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 POLR1CO15160 346 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 CASC3O15234 703 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 DTNBO60941 627 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PCCAP05165 728 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 FHP07954 510 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 RPS17P08708 135 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 RALAP11233 206 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 CKMT2P17540 419 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 MAPK4P31152 587 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PRCPP42785 496 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 NOGQ13253 232 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 POLD3Q15054 466 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PLCL1Q15111 1095 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 TRADDQ15628 312 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PFKFB4Q16877 469 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 LSM12Q3MHD2 195 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC9B1Q4ZJI4 515 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 ADGRF1Q5T601 910 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 MAP3K21Q5TCX8 1036 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 MIER3Q7Z3K6 550 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms