RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 MTSS1O43312 755 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 CAPNS1P04632 268 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 GIMD1P0DJR0 217 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 RBP3P10745 1247 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 CCNCP24863 283 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 GARSP41250 739 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 SCNN1BP51168 640 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 PFN3P60673 137 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 DAB2P98082 770 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 SLC10A7Q0GE19 358 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 SLC10A2Q12908 348 aaPredicted RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 LBRQ14739 615 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 NAA30Q147X3 362 aaPredicted RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 GRM3Q14832 879 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 DRICH1Q6PGQ1 229 aaPredicted RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 DARS2Q6PI48 645 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 ZC3H18Q86VM9 953 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 PAF1Q8N7H5 531 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 DENND6BQ8NEG7 585 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 OR4C6Q8NH72 309 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 C1orf54Q8WWF1 131 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 MAGOHBQ96A72 148 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 ZNF641Q96N77 438 aaPredicted RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 HAUS2Q9NVX0 235 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 SMARCAL1Q9NZC9 954 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 SAE1Q9UBE0 346 aaPredicted RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 FEZ2Q9UHY8 353 aaPredicted RBP17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 PCDHGA1Q9Y5H4 931 aa17.12■□□□□ 0.33
PRPF40A-204ENST00000450303 TSPAN11A1L157 253 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 CFAP69A5D8W1 941 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 TRABD2BA6NFA1 517 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 LIASO43766 372 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 PHF2O75151 1096 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 MAP3K6O95382 1288 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 CSF2P04141 144 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 CSNK1DP48730 415 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 THOP1P52888 689 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 BCL2L1Q07817 233 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 ELP6Q0PNE2 266 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 AP1B1Q10567 949 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 EIF2B5Q13144 721 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 SIX1Q15475 284 aaPredicted RBP17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 CYP1B1Q16678 543 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 PARGQ86W56 976 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 TP53I13Q8NBR0 393 aaPredicted RBP17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 HCAR2Q8TDS4 363 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 GRK7Q8WTQ7 553 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 IFT43Q96FT9 208 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 OLFM3Q96PB7 478 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 TSGA13Q96PP4 275 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 TUBGCP5Q96RT8 1024 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 TCEAL2Q9H3H9 227 aaPredicted RBP17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 CCDC86Q9H6F5 360 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 ATP13A3Q9H7F0 1226 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 ZNF148Q9UQR1 794 aa17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 DRG1Q9Y295 367 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 R3HDM2Q9Y2K5 976 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-204ENST00000450303 A8MX80 341 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 PDE2AO00408 941 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 STK10O94804 968 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 C1SP09871 688 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 C6P13671 934 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 JUPP14923 745 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 JUNDP17535 347 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 SERPINA4P29622 427 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 STIP1P31948 543 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 LIG3P49916 1009 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 HNRNPKP61978 463 aaKnown RBP eCLIP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 PPIDQ08752 370 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 NSUN2Q08J23 767 aaKnown RBP eCLIP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 CAMK2BQ13554 666 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 SNX1Q13596 522 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 RFTN1Q14699 578 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 IRF4Q15306 451 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 TMCO4Q5TGY1 634 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 CCDC70Q6NSX1 233 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 ERAP2Q6P179 960 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 BRAT1Q6PJG6 821 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 ZNF572Q7Z3I7 529 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 TMPRSS12Q86WS5 348 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 CCDC13Q8IYE1 715 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 RBFAQ8N0V3 343 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 BBS5Q8N3I7 341 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 PRELID2Q8N945 189 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 SPATA4Q8NEY3 305 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 ATL2Q8NHH9 583 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 SLC35B2Q8TB61 432 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 LMX1AQ8TE12 382 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 ZNF599Q96NL3 588 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 QKIQ96PU8 341 aaKnown RBP eCLIP17.1■□□□□ 0.333e-9■□□□□ 11.2
PRPF40A-204ENST00000450303 C1QTNF7Q9BXJ2 289 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 SEPT3Q9UH03 358 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 DNPEPQ9ULA0 475 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 PNMA8BQ9ULN7 279 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 ATP8A1Q9Y2Q0 1164 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 KNTC1P50748 2209 aa17.1■□□□□ 0.33
PRPF40A-204ENST00000450303 K7ESM1 405 aa17.09■□□□□ 0.33
PRPF40A-204ENST00000450303 SCAMP1O15126 338 aa17.09■□□□□ 0.33
PRPF40A-204ENST00000450303 LZTS3O60299 673 aaPredicted RBP17.09■□□□□ 0.33
PRPF40A-204ENST00000450303 MAFKO60675 156 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms