RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 HEPHQ9BQS7 1158 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 SEMA6AQ9H2E6 1030 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 MOB1AQ9H8S9 216 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 DDX20Q9UHI6 824 aaKnown RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 KIF21AQ7Z4S6 1674 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 RBAK-RBAKDNI3L0D1 243 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 AIREO43918 545 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 PRAMEF1O95521 474 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 CKMP06732 381 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 ITGA4P13612 1032 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 LCN1P31025 176 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 MAGEA3P43357 314 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 ALDH3B2P48448 385 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 MTM1Q13496 603 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 REXO1L1PQ8IX06 675 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 STAG3L4Q8TBR4 150 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 SMARCD2Q92925 531 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 CNDP2Q96KP4 475 aaKnown RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 IRX2Q9BZI1 471 aaPredicted RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 TMBIM4Q9HC24 238 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 RCOR3Q9P2K3 495 aaPredicted RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 TMPRSS11EQ9UL52 423 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 H3BQF6 201 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 PDLIM1O00151 329 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 SCN2BO60939 215 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 CYP3A4P08684 503 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 DNAJA1P31689 397 aaKnown RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 MCL1Q07820 350 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 SLC30A10Q6XR72 485 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 LINGO2Q7L985 606 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 DHDDSQ86SQ9 333 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 TMEM110Q86TL2 294 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 EZH1Q92800 747 aaPredicted RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 RRNAD1Q96FB5 475 aaKnown RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 RAD9AQ99638 391 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 EIF2AK1Q9BQI3 630 aaKnown RBP8.95□□□□□ -0.98
NIPBL-202ENST00000448238 CFL2Q9Y281 166 aa8.95□□□□□ -0.98
NIPBL-202ENST00000448238 STAG3L1P0CL83 205 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 MYL6P60660 151 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 VLDLRP98155 873 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PTH1RQ03431 593 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 SLC13A2Q13183 592 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 KLHL22Q53GT1 634 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 MRPL41Q8IXM3 137 aaKnown RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ZSCAN4Q8NAM6 433 aaPredicted RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 MOAP1Q96BY2 351 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 BORCS8Q96FH0 119 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ZNF518BQ9C0D4 1074 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 RANBP3Q9H6Z4 567 aaPredicted RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 SLC52A2Q9HAB3 445 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PRDM16Q9HAZ2 1276 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PLEKHG1Q9ULL1 1385 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PIK3C2GO75747 1445 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 POLRMTO00411 1230 aaKnown RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 CCRL2O00421 344 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ARHGEF10O15013 1369 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 EYA4O95677 639 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ASLP04424 464 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PRKAG1P54619 331 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PDIA5Q14554 519 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PUS10Q3MIT2 529 aaKnown RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 WDR24Q96S15 920 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 LRMDAQ9H2I8 198 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PRMT7Q9NVM4 692 aaPredicted RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 CBY1Q9Y3M2 126 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ATAD2BQ9ULI0 1458 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ERBB4Q15303 1308 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 NR2C1P13056 603 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 CD79BP40259 229 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 CTBP2P56545 445 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 S100A7AQ86SG5 101 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 UBR7Q8N806 425 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 RAB2BQ8WUD1 216 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 NKD1Q969G9 470 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PPP1R16AQ96I34 528 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 TBC1D10AQ9BXI6 508 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 NIF3L1Q9GZT8 377 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ABI3Q9P2A4 366 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 POLR3HQ9Y535 204 aaPredicted RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ZNF638Q14966 1978 aaKnown RBP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PNMA6EA0A0J9YXQ4 647 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 NPHP3-ACAD11A0A0J9YXS1 232 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 NPIPA7E9PJI5 369 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ANGPTL7O43827 346 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 NPIPA8P0DM63 369 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 RHOAP61586 193 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 CDK16Q00536 496 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 UBE2SQ16763 222 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 OVOS1Q6IE37 1185 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 USP45Q70EL2 814 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 TRAPPC12Q8WVT3 735 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 COLEC11Q9BWP8 271 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 MAGEL2Q9UJ55 1249 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 SCP2D1Q9UJQ7 156 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PCDHA3Q9Y5H8 950 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 A8MVJ9 347 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 OGTO15294 1046 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 DDX6P26196 483 aaKnown RBP eCLIP8.94□□□□□ -0.98
NIPBL-202ENST00000448238 ITPKBP27987 946 aa8.94□□□□□ -0.98
NIPBL-202ENST00000448238 PTDSS1P48651 473 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms