RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 HMGCLP35914 325 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 HADHAP40939 763 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 GPX6P59796 221 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 ACVR1Q04771 509 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 FRG1Q14331 258 aaKnown RBP20.72■□□□□ 0.91
CHD3-204ENST00000439235 PTPRRQ15256 657 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 CDKN3Q16667 212 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 AGBL4Q5VU57 503 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 KIAA0930Q6ICG6 404 aaPredicted RBP20.72■□□□□ 0.91
CHD3-204ENST00000439235 CES3Q6UWW8 571 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.72■□□□□ 0.91
CHD3-204ENST00000439235 TSPAN33Q86UF1 283 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 HMGB4Q8WW32 186 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 FAM131CQ96AQ9 280 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 TRIM56Q9BRZ2 755 aaKnown RBP20.72■□□□□ 0.91
CHD3-204ENST00000439235 SLC6A17Q9H1V8 727 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 NLE1Q9NVX2 485 aaPredicted RBP20.72■□□□□ 0.91
CHD3-204ENST00000439235 FBXL12Q9NXK8 326 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 BCCIPQ9P287 314 aaKnown RBP eCLIP20.72■□□□□ 0.91
CHD3-204ENST00000439235 FZD4Q9ULV1 537 aa20.72■□□□□ 0.91
CHD3-204ENST00000439235 ZCWPW2A0A1B0GU75 182 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 PSMD11O00231 422 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 RPP40O75818 363 aaKnown RBP20.71■□□□□ 0.91
CHD3-204ENST00000439235 RALGDSQ12967 914 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 UAP1Q16222 522 aaPredicted RBP20.71■□□□□ 0.91
CHD3-204ENST00000439235 LONRF1Q17RB8 773 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 TMEM52BQ4KMG9 183 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 CWF19L1Q69YN2 538 aaKnown RBP20.71■□□□□ 0.91
CHD3-204ENST00000439235 ESRP1Q6NXG1 681 aaKnown RBP20.71■□□□□ 0.91
CHD3-204ENST00000439235 PGBD3Q8N328 593 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 OR4K2Q8NGD2 314 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 DNAJC1Q96KC8 554 aaKnown RBP20.71■□□□□ 0.91
CHD3-204ENST00000439235 ZNF778Q96MU6 729 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 EPB41L4BQ9H329 900 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 PLAC1Q9HBJ0 212 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 IL17CQ9P0M4 197 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 ITM2BQ9Y287 266 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 KCTD3Q9Y597 815 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 FADS3Q9Y5Q0 445 aa20.71■□□□□ 0.91
CHD3-204ENST00000439235 A8MX80 341 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 SPINT1O43278 529 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 TSPAN6O43657 245 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 BUD23O43709 281 aaKnown RBP20.7■□□□□ 0.9
CHD3-204ENST00000439235 DCNP07585 359 aaKnown RBP20.7■□□□□ 0.9
CHD3-204ENST00000439235 ELFN1P0C7U0 828 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 PSMA3P25788 255 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 STC1P52823 247 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 PRAMEP78395 509 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 SLC29A2Q14542 456 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 CNGA3Q16281 694 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 ZDHHC20Q5W0Z9 365 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 ZNF449Q6P9G9 518 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 CYS1Q717R9 158 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 HDXQ7Z353 690 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 RAVER1Q8IY67 606 aaKnown RBP20.7■□□□□ 0.9
CHD3-204ENST00000439235 OR13C4Q8NGS5 318 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 OR13J1Q8NGT2 312 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 GABPB2Q8TAK5 448 aaPredicted RBP20.7■□□□□ 0.9
CHD3-204ENST00000439235 FAM122AQ96E09 287 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 CERS2Q96G23 380 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 FCRL3Q96P31 734 aaPredicted RBP20.7■□□□□ 0.9
CHD3-204ENST00000439235 FUT8Q9BYC5 575 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 RAD18Q9NS91 495 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 PKD2L2Q9NZM6 624 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 SLC2A6Q9UGQ3 507 aa20.7■□□□□ 0.9
CHD3-204ENST00000439235 TCRBV9S1A1TA0A576 114 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 APBB3O95704 486 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 C1SP09871 688 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 NUDT17P0C025 328 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 AOC1P19801 751 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 PLA2G5P39877 138 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 SEMG2Q02383 582 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 CASP8Q14790 479 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 UBAP2Q5T6F2 1119 aaKnown RBP20.69■□□□□ 0.9
CHD3-204ENST00000439235 PDPK2PQ6A1A2 396 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 ANO7Q6IWH7 933 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 CBARPQ8N350 705 aaPredicted RBP20.69■□□□□ 0.9
CHD3-204ENST00000439235 CXorf40AQ8TE69 158 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 FBF1Q8TES7 1133 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 CDKL2Q92772 493 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 HHIPQ96QV1 700 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 CCDC77Q9BR77 488 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 C20orf96Q9NUD7 363 aaPredicted RBP20.69■□□□□ 0.9
CHD3-204ENST00000439235 SERGEFQ9UGK8 458 aa20.69■□□□□ 0.9
CHD3-204ENST00000439235 A0A0U1RQS6 177 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 RGSL1A5PLK6 1076 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 TMEM221A6NGB7 291 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 M0R296 226 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 PLRG1O43660 514 aaKnown RBP20.68■□□□□ 0.9
CHD3-204ENST00000439235 VAPBO95292 243 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 SPAM1P38567 509 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 LIG3P49916 1009 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 CCR3P51677 355 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 PTPN5P54829 565 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 TMPRSS15P98073 1019 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 PTSQ03393 145 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 MGAT5Q09328 741 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 MTAPQ13126 283 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 KLHL38Q2WGJ6 581 aa20.68■□□□□ 0.9
CHD3-204ENST00000439235 AFTPHQ6ULP2 937 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms