RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PDE2AO00408 941 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-201ENST00000437679 MTSS1O43312 755 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 RASGRP1O95267 797 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 MMP2P08253 660 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 HOXC4P09017 264 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-201ENST00000437679 GIMD1P0DJR0 217 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 CTSEP14091 401 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 ZNF30P17039 623 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 KELP23276 732 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 ACP1P24666 158 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 CTNNA2P26232 953 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 ETV3P41162 512 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 CETN2P41208 172 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 RWDD2BP57060 319 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 KIAA1024LP59773 190 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 SKOR1P84550 965 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 PRKD1Q15139 912 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-201ENST00000437679 PTPRRQ15256 657 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 ALG11Q2TAA5 492 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 TEX44Q53QW1 395 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 CCDC181Q5TID7 509 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 LRRC66Q68CR7 880 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 PNCKQ6P2M8 343 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 CRTC1Q6UUV9 634 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 DHRS13Q6UX07 377 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 B4GALNT4Q76KP1 1039 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 TMPRSS7Q7RTY8 843 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 HSD11B1LQ7Z5J1 315 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 HID1Q8IV36 788 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 SYCE1Q8N0S2 351 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 CBARPQ8N350 705 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-201ENST00000437679 TSACCQ96A04 125 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-201ENST00000437679 FUBP1Q96AE4 644 aaKnown RBP15.2■□□□□ 0.02
LIMS3-201ENST00000437679 HEMGNQ9BXL5 484 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 ADGRE3Q9BY15 652 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 SLC25A51Q9H1U9 297 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 TCEAL2Q9H3H9 227 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-201ENST00000437679 WDR26Q9H7D7 661 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 PTPRBP23467 1997 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 GOLGA6CA6NDK9 693 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 GOLGA6BA6NDN3 693 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 CAPN8A6NHC0 703 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 TPP1O14773 563 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 PRLP01236 227 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 TNFP01375 233 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 ANXA6P08133 673 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 GOLGA6DP0CG33 693 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 TSHRP16473 764 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 PTPN3P26045 913 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 TRIM23P36406 574 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 DUSP3P51452 185 aaPredicted RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 HK3P52790 923 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 SRP54P61011 504 aaKnown RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 ADCY2Q08462 1091 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 C1orf61Q13536 156 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 DEFB133Q30KQ1 61 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 ZCCHC8Q6NZY4 707 aaKnown RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 UNQ6494/PRO21346Q6UXR6 183 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 Q6ZVL8 140 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 BBS12Q6ZW61 710 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 RD3Q7Z3Z2 195 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 PEX26Q7Z412 305 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 ZC3H18Q86VM9 953 aaKnown RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 FSTL5Q8N475 847 aaPredicted RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 LRRC57Q8N9N7 239 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 FAM181AQ8N9Y4 354 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 OR56A4Q8NGH8 313 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 HAUS1Q96CS2 278 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 IMP4Q96G21 291 aaKnown RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 APOLD1Q96LR9 279 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 RBM15Q96T37 977 aaKnown RBP eCLIP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 MLPHQ9BV36 600 aaPredicted RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 LRRC61Q9BV99 259 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 OSBPL8Q9BZF1 889 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 USP29Q9HBJ7 922 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 GLOD4Q9HC38 313 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 PHPT1Q9NRX4 125 aaPredicted RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 GOLGA6AQ9NYA3 693 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 NCKIPSDQ9NZQ3 722 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 AMFRQ9UKV5 643 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 PNMA8BQ9ULN7 279 aaPredicted RBP15.19■□□□□ 0.02
LIMS3-201ENST00000437679 DOLKQ9UPQ8 538 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 SPEGQ15772 3267 aa15.19■□□□□ 0.02
LIMS3-201ENST00000437679 HACD1B0YJ81 288 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 ANKRD66B4E2M5 251 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 LMO7DNF2Z398 122 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 APOC4-APOC2K7ER74 178 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 GCATO75600 419 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 APOC2P02655 101 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 CKMT1AP12532 417 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 PTSQ03393 145 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 ELOCQ15369 112 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 SMAD1Q15797 465 aaKnown RBP15.18■□□□□ 0.02
LIMS3-201ENST00000437679 QPCTQ16769 361 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 RAET1GQ6H3X3 334 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 CCNI2Q6ZMN8 369 aaPredicted RBP15.18■□□□□ 0.02
LIMS3-201ENST00000437679 TECPR1Q7Z6L1 1165 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 UBL4BQ8N7F7 174 aa15.18■□□□□ 0.02
LIMS3-201ENST00000437679 SCG3Q8WXD2 468 aaKnown RBP15.18■□□□□ 0.02
LIMS3-201ENST00000437679 GATA6Q92908 595 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms